miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23984 5' -58.9 NC_005262.1 + 55307 0.66 0.581381
Target:  5'- aGCGCGGCcugcgcgacgaaGCGA-CggcGGUUGUGCGUGu -3'
miRNA:   3'- aCGUGCCG------------CGUUaGa--CCAGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 56931 0.66 0.581381
Target:  5'- cGC-CGGaGCuuguUCUGGUCGUcgugguGCGCGu -3'
miRNA:   3'- aCGuGCCgCGuu--AGACCAGCG------CGCGC- -5'
23984 5' -58.9 NC_005262.1 + 54424 0.66 0.581381
Target:  5'- cGCGgaGGCGCAGgcc-GcCGCGCGCGc -3'
miRNA:   3'- aCGUg-CCGCGUUagacCaGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 42328 0.66 0.581381
Target:  5'- aGCGCGGCGCucggcAUC-GGaacCGCGaGCGg -3'
miRNA:   3'- aCGUGCCGCGu----UAGaCCa--GCGCgCGC- -5'
23984 5' -58.9 NC_005262.1 + 60509 0.66 0.570838
Target:  5'- cGCGCGGCGCA----GGcCGCcaagaGCGUGa -3'
miRNA:   3'- aCGUGCCGCGUuagaCCaGCG-----CGCGC- -5'
23984 5' -58.9 NC_005262.1 + 48492 0.66 0.570838
Target:  5'- cGgGCGGCGCGAcggcagccgCaGGUaacaGCGCGCu -3'
miRNA:   3'- aCgUGCCGCGUUa--------GaCCAg---CGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 17568 0.66 0.570838
Target:  5'- cGCgGCGGCGCGcgaagccgaggAgaagCUGGcggcgcaGCGCGCGg -3'
miRNA:   3'- aCG-UGCCGCGU-----------Ua---GACCag-----CGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 13304 0.66 0.570838
Target:  5'- aGCguugGCGGaCGCg--CcGGUUGCGCGCa -3'
miRNA:   3'- aCG----UGCC-GCGuuaGaCCAGCGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 17644 0.66 0.570838
Target:  5'- cGCGCGccgcCGCGG-CUGccgccUCGCGCGCGa -3'
miRNA:   3'- aCGUGCc---GCGUUaGACc----AGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 32961 0.66 0.569786
Target:  5'- gGCAaccaccguucgauCGGCGUgaaGAUCacGGUCGCgGCGCa -3'
miRNA:   3'- aCGU-------------GCCGCG---UUAGa-CCAGCG-CGCGc -5'
23984 5' -58.9 NC_005262.1 + 30405 0.66 0.566634
Target:  5'- cUGC-UGGCGCAucucgcucgcgGUCUGGgccuugucgacaGCGCGCu -3'
miRNA:   3'- -ACGuGCCGCGU-----------UAGACCag----------CGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 50366 0.66 0.560343
Target:  5'- cGCgaGCGGCGCAuucGUCgaccGUgGCGaCGCGa -3'
miRNA:   3'- aCG--UGCCGCGU---UAGac--CAgCGC-GCGC- -5'
23984 5' -58.9 NC_005262.1 + 51303 0.66 0.549901
Target:  5'- aGCcCGGUGCGAUCagcaUCGCccGCGCGg -3'
miRNA:   3'- aCGuGCCGCGUUAGacc-AGCG--CGCGC- -5'
23984 5' -58.9 NC_005262.1 + 62808 0.66 0.549901
Target:  5'- aGCGC-GC-CGAUCagGGUgCGUGCGCGa -3'
miRNA:   3'- aCGUGcCGcGUUAGa-CCA-GCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 52730 0.66 0.549901
Target:  5'- cGCACGuucUGC--UCUgcGGUCGCGCGCc -3'
miRNA:   3'- aCGUGCc--GCGuuAGA--CCAGCGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 59487 0.66 0.549901
Target:  5'- uUGCGC-GUGCGAU---GUCGCGCGCc -3'
miRNA:   3'- -ACGUGcCGCGUUAgacCAGCGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 5867 0.66 0.549901
Target:  5'- cGCGCGGCGCAAgauggccuguuUCcGGaUgGC-CGCGa -3'
miRNA:   3'- aCGUGCCGCGUU-----------AGaCC-AgCGcGCGC- -5'
23984 5' -58.9 NC_005262.1 + 41265 0.66 0.548861
Target:  5'- gGCGCGcaCGCGAUCgcggcGGUgcccuccUGCGCGCGc -3'
miRNA:   3'- aCGUGCc-GCGUUAGa----CCA-------GCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 43064 0.66 0.539521
Target:  5'- gGCcCGGCGCGGUUUucagccaGUCGuUGCGCGu -3'
miRNA:   3'- aCGuGCCGCGUUAGAc------CAGC-GCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 55012 0.66 0.539521
Target:  5'- aUGUACcucGCGCAcgC-GGUCG-GCGCGg -3'
miRNA:   3'- -ACGUGc--CGCGUuaGaCCAGCgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.