miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23984 5' -58.9 NC_005262.1 + 12016 1.08 0.000622
Target:  5'- uUGCACGGCGCAAUCUGGUCGCGCGCGu -3'
miRNA:   3'- -ACGUGCCGCGUUAGACCAGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 17533 0.83 0.044303
Target:  5'- aUGCACGG-GCAcgC-GGUCGCGCGCGa -3'
miRNA:   3'- -ACGUGCCgCGUuaGaCCAGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 12210 0.78 0.096974
Target:  5'- aGCGCGGCG--AUCUGcUCGCGCGCa -3'
miRNA:   3'- aCGUGCCGCguUAGACcAGCGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 21764 0.78 0.099678
Target:  5'- aGCGCGGCGCcgccgcUCaGGUUGCGCGUGu -3'
miRNA:   3'- aCGUGCCGCGuu----AGaCCAGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 11488 0.77 0.111222
Target:  5'- gGCGCGGCGCGGcuUCggcgUGGagcCGCGCGCGa -3'
miRNA:   3'- aCGUGCCGCGUU--AG----ACCa--GCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 50175 0.77 0.114298
Target:  5'- cGCGCGGCGCGGguUC-GGUCGgCGCaGCGg -3'
miRNA:   3'- aCGUGCCGCGUU--AGaCCAGC-GCG-CGC- -5'
23984 5' -58.9 NC_005262.1 + 12931 0.76 0.138146
Target:  5'- cUGCGCGGCGCGcugaagGG-CGUGCGCGa -3'
miRNA:   3'- -ACGUGCCGCGUuaga--CCaGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 51424 0.75 0.149706
Target:  5'- cUGCAUGGCGgauuCGAUCUuGcCGCGCGCGg -3'
miRNA:   3'- -ACGUGCCGC----GUUAGAcCaGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 53446 0.75 0.153751
Target:  5'- cGCAUGGCGcCGAUCaGGUU-CGCGCGg -3'
miRNA:   3'- aCGUGCCGC-GUUAGaCCAGcGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 28163 0.75 0.166485
Target:  5'- cGCGCGGCGCAA-CUG--CGCGCgGCGg -3'
miRNA:   3'- aCGUGCCGCGUUaGACcaGCGCG-CGC- -5'
23984 5' -58.9 NC_005262.1 + 11297 0.74 0.180158
Target:  5'- gGCGCGGCucuCGAUCUugcaGGUgGCGCGCa -3'
miRNA:   3'- aCGUGCCGc--GUUAGA----CCAgCGCGCGc -5'
23984 5' -58.9 NC_005262.1 + 25345 0.73 0.20516
Target:  5'- gUGCcagagGCGGCGCAGgagCcgGcGUUGCGCGCGg -3'
miRNA:   3'- -ACG-----UGCCGCGUUa--Ga-C-CAGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 55482 0.73 0.210508
Target:  5'- cUGCucgauGCGGCGCucGAUCUGcUUGCGCGUGa -3'
miRNA:   3'- -ACG-----UGCCGCG--UUAGACcAGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 16979 0.73 0.215976
Target:  5'- cGgGCGGUGCGGUgUGGUgcggcccgGCGCGCGg -3'
miRNA:   3'- aCgUGCCGCGUUAgACCAg-------CGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 17147 0.73 0.218197
Target:  5'- cGCGCGuCGCAAUCgagaaggccggcaaGGcCGCGCGCGa -3'
miRNA:   3'- aCGUGCcGCGUUAGa-------------CCaGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 43826 0.73 0.233112
Target:  5'- cGaCACGGcCGCGggCcGGcCGCGCGCGg -3'
miRNA:   3'- aC-GUGCC-GCGUuaGaCCaGCGCGCGC- -5'
23984 5' -58.9 NC_005262.1 + 24326 0.72 0.251378
Target:  5'- aUGguCGGCGCGAucgacaugcggcUCUGcGUCGgCGCGCc -3'
miRNA:   3'- -ACguGCCGCGUU------------AGAC-CAGC-GCGCGc -5'
23984 5' -58.9 NC_005262.1 + 38232 0.72 0.251378
Target:  5'- cGCagACGGCuGCcGUCUGGUUGggaGCGCGg -3'
miRNA:   3'- aCG--UGCCG-CGuUAGACCAGCg--CGCGC- -5'
23984 5' -58.9 NC_005262.1 + 56208 0.72 0.257724
Target:  5'- cGCuCGGCGCGGUCgGGUCGaCGaaaCGCa -3'
miRNA:   3'- aCGuGCCGCGUUAGaCCAGC-GC---GCGc -5'
23984 5' -58.9 NC_005262.1 + 49784 0.72 0.2642
Target:  5'- gGCACGccguCGCGGUUcaGGUUGCGCGCGc -3'
miRNA:   3'- aCGUGCc---GCGUUAGa-CCAGCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.