Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23985 | 5' | -60.8 | NC_005262.1 | + | 5139 | 0.66 | 0.465539 |
Target: 5'- -cGGGCgGCGCUGaucCUGCuCGGCGc- -3' miRNA: 3'- cuUCCGgCGCGACa--GACGcGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 12910 | 0.66 | 0.455981 |
Target: 5'- cGAGGCCGCGCUccuUCUucacGCGcCGGCu-- -3' miRNA: 3'- cUUCCGGCGCGAc--AGA----CGC-GCCGucc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 56435 | 0.66 | 0.455981 |
Target: 5'- cGAGGGCaaaaaGCGCgugCUGaucgGCGGCAaGGa -3' miRNA: 3'- -CUUCCGg----CGCGacaGACg---CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 28281 | 0.66 | 0.455981 |
Target: 5'- --cGGCCgGCGCUGUCgccuaUGCGC-GCAa- -3' miRNA: 3'- cuuCCGG-CGCGACAG-----ACGCGcCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 45315 | 0.66 | 0.446531 |
Target: 5'- cAAGGCUacaacgGCGCgaugcaagGUCUGCaagGCGGCGcGGg -3' miRNA: 3'- cUUCCGG------CGCGa-------CAGACG---CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 5045 | 0.66 | 0.446531 |
Target: 5'- --cGGCCgGCGcCUGaUCgGCG-GGCAGGc -3' miRNA: 3'- cuuCCGG-CGC-GAC-AGaCGCgCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 46557 | 0.66 | 0.446531 |
Target: 5'- -cGGGCUGCGUcGUggccgGCGCGGCAu- -3' miRNA: 3'- cuUCCGGCGCGaCAga---CGCGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 26357 | 0.66 | 0.43719 |
Target: 5'- --uGGUC-CGC-GUC-GUGCGGCAGGa -3' miRNA: 3'- cuuCCGGcGCGaCAGaCGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 13238 | 0.66 | 0.43719 |
Target: 5'- aGGAGuuguGCCGCGCaGcgcGCGCGGCGGa -3' miRNA: 3'- -CUUC----CGGCGCGaCagaCGCGCCGUCc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 46772 | 0.66 | 0.43719 |
Target: 5'- ---cGCgGCGCUGaCUGCauCGGCGGGc -3' miRNA: 3'- cuucCGgCGCGACaGACGc-GCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 50190 | 0.66 | 0.427963 |
Target: 5'- --cGGCCG-GCuucUGUUcGCGCGGCGcGGg -3' miRNA: 3'- cuuCCGGCgCG---ACAGaCGCGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 4581 | 0.67 | 0.417947 |
Target: 5'- --cGGCgGCGCUGcUCggGCGUGagcgcccGCAGGa -3' miRNA: 3'- cuuCCGgCGCGAC-AGa-CGCGC-------CGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 36168 | 0.67 | 0.40986 |
Target: 5'- aAAGGCaauuGUGCcGUCcggguaGUGCGGCAGGu -3' miRNA: 3'- cUUCCGg---CGCGaCAGa-----CGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 27687 | 0.67 | 0.400989 |
Target: 5'- cGAcGGCCuguuCGCUGUCgaGCGgauUGGCAGGc -3' miRNA: 3'- -CUuCCGGc---GCGACAGa-CGC---GCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 10792 | 0.67 | 0.384475 |
Target: 5'- --cGGCCGCGUgcgcgcggccucgaUCUGCGCauGCAGGa -3' miRNA: 3'- cuuCCGGCGCGac------------AGACGCGc-CGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 41285 | 0.67 | 0.384475 |
Target: 5'- --cGGCCGCGCgugggcgacaucaagGUaugGCGCGGCGc- -3' miRNA: 3'- cuuCCGGCGCGa--------------CAga-CGCGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 10708 | 0.67 | 0.375122 |
Target: 5'- cGAGGCCGCGCgca---CGCGGCcGGc -3' miRNA: 3'- cUUCCGGCGCGacagacGCGCCGuCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 57357 | 0.67 | 0.375122 |
Target: 5'- -cGGGCCGUGag--CUGCGCGaGCuGGu -3' miRNA: 3'- cuUCCGGCGCgacaGACGCGC-CGuCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 58991 | 0.68 | 0.342431 |
Target: 5'- -cGGGCCGCcggcCUGaUCgcgcaGCGCGGCAGc -3' miRNA: 3'- cuUCCGGCGc---GAC-AGa----CGCGCCGUCc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 19955 | 0.68 | 0.334587 |
Target: 5'- -uGGGCCucacuGCGCaGaCUGUGCGGCGGu -3' miRNA: 3'- cuUCCGG-----CGCGaCaGACGCGCCGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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