miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23985 5' -60.8 NC_005262.1 + 4581 0.67 0.417947
Target:  5'- --cGGCgGCGCUGcUCggGCGUGagcgcccGCAGGa -3'
miRNA:   3'- cuuCCGgCGCGAC-AGa-CGCGC-------CGUCC- -5'
23985 5' -60.8 NC_005262.1 + 5045 0.66 0.446531
Target:  5'- --cGGCCgGCGcCUGaUCgGCG-GGCAGGc -3'
miRNA:   3'- cuuCCGG-CGC-GAC-AGaCGCgCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 5139 0.66 0.465539
Target:  5'- -cGGGCgGCGCUGaucCUGCuCGGCGc- -3'
miRNA:   3'- cuUCCGgCGCGACa--GACGcGCCGUcc -5'
23985 5' -60.8 NC_005262.1 + 10708 0.67 0.375122
Target:  5'- cGAGGCCGCGCgca---CGCGGCcGGc -3'
miRNA:   3'- cUUCCGGCGCGacagacGCGCCGuCC- -5'
23985 5' -60.8 NC_005262.1 + 10792 0.67 0.384475
Target:  5'- --cGGCCGCGUgcgcgcggccucgaUCUGCGCauGCAGGa -3'
miRNA:   3'- cuuCCGGCGCGac------------AGACGCGc-CGUCC- -5'
23985 5' -60.8 NC_005262.1 + 10963 0.74 0.131396
Target:  5'- -cAGGCauuCGCGCUGUCgGCGCGcCGGGa -3'
miRNA:   3'- cuUCCG---GCGCGACAGaCGCGCcGUCC- -5'
23985 5' -60.8 NC_005262.1 + 12168 1.1 0.000303
Target:  5'- uGAAGGCCGCGCUGUCUGCGCGGCAGGa -3'
miRNA:   3'- -CUUCCGGCGCGACAGACGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 12910 0.66 0.455981
Target:  5'- cGAGGCCGCGCUccuUCUucacGCGcCGGCu-- -3'
miRNA:   3'- cUUCCGGCGCGAc--AGA----CGC-GCCGucc -5'
23985 5' -60.8 NC_005262.1 + 13147 0.73 0.158197
Target:  5'- ---cGCCGCGCgcgCUGCGCGGCAc- -3'
miRNA:   3'- cuucCGGCGCGacaGACGCGCCGUcc -5'
23985 5' -60.8 NC_005262.1 + 13238 0.66 0.43719
Target:  5'- aGGAGuuguGCCGCGCaGcgcGCGCGGCGGa -3'
miRNA:   3'- -CUUC----CGGCGCGaCagaCGCGCCGUCc -5'
23985 5' -60.8 NC_005262.1 + 15391 0.68 0.326874
Target:  5'- cGggGGUuugacugaugCGCGCUGcugcugaucuUCUGgGCGGgGGGa -3'
miRNA:   3'- -CuuCCG----------GCGCGAC----------AGACgCGCCgUCC- -5'
23985 5' -60.8 NC_005262.1 + 15586 0.72 0.18984
Target:  5'- uGGAGGCgCGCGCgcgCgaggagcgcGUGCGGCAGGa -3'
miRNA:   3'- -CUUCCG-GCGCGacaGa--------CGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 17102 0.7 0.25074
Target:  5'- -cGGGCCGCGaggagGUCcaccGCGCGGCGauGGa -3'
miRNA:   3'- cuUCCGGCGCga---CAGa---CGCGCCGU--CC- -5'
23985 5' -60.8 NC_005262.1 + 19955 0.68 0.334587
Target:  5'- -uGGGCCucacuGCGCaGaCUGUGCGGCGGu -3'
miRNA:   3'- cuUCCGG-----CGCGaCaGACGCGCCGUCc -5'
23985 5' -60.8 NC_005262.1 + 26357 0.66 0.43719
Target:  5'- --uGGUC-CGC-GUC-GUGCGGCAGGa -3'
miRNA:   3'- cuuCCGGcGCGaCAGaCGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 27687 0.67 0.400989
Target:  5'- cGAcGGCCuguuCGCUGUCgaGCGgauUGGCAGGc -3'
miRNA:   3'- -CUuCCGGc---GCGACAGa-CGC---GCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 28281 0.66 0.455981
Target:  5'- --cGGCCgGCGCUGUCgccuaUGCGC-GCAa- -3'
miRNA:   3'- cuuCCGG-CGCGACAG-----ACGCGcCGUcc -5'
23985 5' -60.8 NC_005262.1 + 35083 0.7 0.25074
Target:  5'- -cGGGcCCGCGCUG-CUGCcCGGCugccuGGa -3'
miRNA:   3'- cuUCC-GGCGCGACaGACGcGCCGu----CC- -5'
23985 5' -60.8 NC_005262.1 + 36168 0.67 0.40986
Target:  5'- aAAGGCaauuGUGCcGUCcggguaGUGCGGCAGGu -3'
miRNA:   3'- cUUCCGg---CGCGaCAGa-----CGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 40476 0.71 0.232684
Target:  5'- -uGGGCCGgGCUGguaUCUG-GCGGaCGGGc -3'
miRNA:   3'- cuUCCGGCgCGAC---AGACgCGCC-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.