miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23985 5' -60.8 NC_005262.1 + 41285 0.67 0.384475
Target:  5'- --cGGCCGCGCgugggcgacaucaagGUaugGCGCGGCGc- -3'
miRNA:   3'- cuuCCGGCGCGa--------------CAga-CGCGCCGUcc -5'
23985 5' -60.8 NC_005262.1 + 42084 0.7 0.263409
Target:  5'- cGAGGCgggcguucguCGCGU--UCUGCGCGGCGGu -3'
miRNA:   3'- cUUCCG----------GCGCGacAGACGCGCCGUCc -5'
23985 5' -60.8 NC_005262.1 + 42253 0.7 0.276593
Target:  5'- cGAGcGCCGCGCUcaCUGCggcgacgaGCGGCAcGGg -3'
miRNA:   3'- cUUC-CGGCGCGAcaGACG--------CGCCGU-CC- -5'
23985 5' -60.8 NC_005262.1 + 43842 0.74 0.134951
Target:  5'- --cGGCCGCGCgcgGcggUGCGcCGGCAGGa -3'
miRNA:   3'- cuuCCGGCGCGa--Cag-ACGC-GCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 44978 0.81 0.043712
Target:  5'- cGAGGGCCGaCGUgcagcaGUCcGCGCGGCAGGc -3'
miRNA:   3'- -CUUCCGGC-GCGa-----CAGaCGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 45315 0.66 0.446531
Target:  5'- cAAGGCUacaacgGCGCgaugcaagGUCUGCaagGCGGCGcGGg -3'
miRNA:   3'- cUUCCGG------CGCGa-------CAGACG---CGCCGU-CC- -5'
23985 5' -60.8 NC_005262.1 + 46529 0.69 0.297349
Target:  5'- -cGGGuCCgGCGCgggCgGCGCGGCGGGc -3'
miRNA:   3'- cuUCC-GG-CGCGacaGaCGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 46557 0.66 0.446531
Target:  5'- -cGGGCUGCGUcGUggccgGCGCGGCAu- -3'
miRNA:   3'- cuUCCGGCGCGaCAga---CGCGCCGUcc -5'
23985 5' -60.8 NC_005262.1 + 46616 0.83 0.028643
Target:  5'- -cGGcGCCGCGCUGggcugCUGCGCGgGCAGGg -3'
miRNA:   3'- cuUC-CGGCGCGACa----GACGCGC-CGUCC- -5'
23985 5' -60.8 NC_005262.1 + 46772 0.66 0.43719
Target:  5'- ---cGCgGCGCUGaCUGCauCGGCGGGc -3'
miRNA:   3'- cuucCGgCGCGACaGACGc-GCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 48113 0.71 0.221263
Target:  5'- --cGGCCG-GCUG-CUGCGUGGUcuGGGu -3'
miRNA:   3'- cuuCCGGCgCGACaGACGCGCCG--UCC- -5'
23985 5' -60.8 NC_005262.1 + 50190 0.66 0.427963
Target:  5'- --cGGCCG-GCuucUGUUcGCGCGGCGcGGg -3'
miRNA:   3'- cuuCCGGCgCG---ACAGaCGCGCCGU-CC- -5'
23985 5' -60.8 NC_005262.1 + 50429 0.71 0.215734
Target:  5'- cGAGGGCCGCGUgcacGUCgucgugccGCGCGaGgAGGa -3'
miRNA:   3'- -CUUCCGGCGCGa---CAGa-------CGCGC-CgUCC- -5'
23985 5' -60.8 NC_005262.1 + 50430 0.71 0.232684
Target:  5'- --cGGUCGuCGCgggcgcuucGUcCUGCGCGGCGGGc -3'
miRNA:   3'- cuuCCGGC-GCGa--------CA-GACGCGCCGUCC- -5'
23985 5' -60.8 NC_005262.1 + 52722 0.71 0.238578
Target:  5'- cGAGGCCGCGCUG-CUGaCGaaguucacgGGCuGGg -3'
miRNA:   3'- cUUCCGGCGCGACaGAC-GCg--------CCGuCC- -5'
23985 5' -60.8 NC_005262.1 + 56435 0.66 0.455981
Target:  5'- cGAGGGCaaaaaGCGCgugCUGaucgGCGGCAaGGa -3'
miRNA:   3'- -CUUCCGg----CGCGacaGACg---CGCCGU-CC- -5'
23985 5' -60.8 NC_005262.1 + 57357 0.67 0.375122
Target:  5'- -cGGGCCGUGag--CUGCGCGaGCuGGu -3'
miRNA:   3'- cuUCCGGCGCgacaGACGCGC-CGuCC- -5'
23985 5' -60.8 NC_005262.1 + 58991 0.68 0.342431
Target:  5'- -cGGGCCGCcggcCUGaUCgcgcaGCGCGGCAGc -3'
miRNA:   3'- cuUCCGGCGc---GAC-AGa----CGCGCCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.