Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23985 | 5' | -60.8 | NC_005262.1 | + | 58991 | 0.68 | 0.342431 |
Target: 5'- -cGGGCCGCcggcCUGaUCgcgcaGCGCGGCAGc -3' miRNA: 3'- cuUCCGGCGc---GAC-AGa----CGCGCCGUCc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 57357 | 0.67 | 0.375122 |
Target: 5'- -cGGGCCGUGag--CUGCGCGaGCuGGu -3' miRNA: 3'- cuUCCGGCGCgacaGACGCGC-CGuCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 56435 | 0.66 | 0.455981 |
Target: 5'- cGAGGGCaaaaaGCGCgugCUGaucgGCGGCAaGGa -3' miRNA: 3'- -CUUCCGg----CGCGacaGACg---CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 52722 | 0.71 | 0.238578 |
Target: 5'- cGAGGCCGCGCUG-CUGaCGaaguucacgGGCuGGg -3' miRNA: 3'- cUUCCGGCGCGACaGAC-GCg--------CCGuCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 50430 | 0.71 | 0.232684 |
Target: 5'- --cGGUCGuCGCgggcgcuucGUcCUGCGCGGCGGGc -3' miRNA: 3'- cuuCCGGC-GCGa--------CA-GACGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 50429 | 0.71 | 0.215734 |
Target: 5'- cGAGGGCCGCGUgcacGUCgucgugccGCGCGaGgAGGa -3' miRNA: 3'- -CUUCCGGCGCGa---CAGa-------CGCGC-CgUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 50190 | 0.66 | 0.427963 |
Target: 5'- --cGGCCG-GCuucUGUUcGCGCGGCGcGGg -3' miRNA: 3'- cuuCCGGCgCG---ACAGaCGCGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 48113 | 0.71 | 0.221263 |
Target: 5'- --cGGCCG-GCUG-CUGCGUGGUcuGGGu -3' miRNA: 3'- cuuCCGGCgCGACaGACGCGCCG--UCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 46772 | 0.66 | 0.43719 |
Target: 5'- ---cGCgGCGCUGaCUGCauCGGCGGGc -3' miRNA: 3'- cuucCGgCGCGACaGACGc-GCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 46616 | 0.83 | 0.028643 |
Target: 5'- -cGGcGCCGCGCUGggcugCUGCGCGgGCAGGg -3' miRNA: 3'- cuUC-CGGCGCGACa----GACGCGC-CGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 46557 | 0.66 | 0.446531 |
Target: 5'- -cGGGCUGCGUcGUggccgGCGCGGCAu- -3' miRNA: 3'- cuUCCGGCGCGaCAga---CGCGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 46529 | 0.69 | 0.297349 |
Target: 5'- -cGGGuCCgGCGCgggCgGCGCGGCGGGc -3' miRNA: 3'- cuUCC-GG-CGCGacaGaCGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 45315 | 0.66 | 0.446531 |
Target: 5'- cAAGGCUacaacgGCGCgaugcaagGUCUGCaagGCGGCGcGGg -3' miRNA: 3'- cUUCCGG------CGCGa-------CAGACG---CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 44978 | 0.81 | 0.043712 |
Target: 5'- cGAGGGCCGaCGUgcagcaGUCcGCGCGGCAGGc -3' miRNA: 3'- -CUUCCGGC-GCGa-----CAGaCGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 43842 | 0.74 | 0.134951 |
Target: 5'- --cGGCCGCGCgcgGcggUGCGcCGGCAGGa -3' miRNA: 3'- cuuCCGGCGCGa--Cag-ACGC-GCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 42253 | 0.7 | 0.276593 |
Target: 5'- cGAGcGCCGCGCUcaCUGCggcgacgaGCGGCAcGGg -3' miRNA: 3'- cUUC-CGGCGCGAcaGACG--------CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 42084 | 0.7 | 0.263409 |
Target: 5'- cGAGGCgggcguucguCGCGU--UCUGCGCGGCGGu -3' miRNA: 3'- cUUCCG----------GCGCGacAGACGCGCCGUCc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 41285 | 0.67 | 0.384475 |
Target: 5'- --cGGCCGCGCgugggcgacaucaagGUaugGCGCGGCGc- -3' miRNA: 3'- cuuCCGGCGCGa--------------CAga-CGCGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 40476 | 0.71 | 0.232684 |
Target: 5'- -uGGGCCGgGCUGguaUCUG-GCGGaCGGGc -3' miRNA: 3'- cuUCCGGCgCGAC---AGACgCGCC-GUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 36168 | 0.67 | 0.40986 |
Target: 5'- aAAGGCaauuGUGCcGUCcggguaGUGCGGCAGGu -3' miRNA: 3'- cUUCCGg---CGCGaCAGa-----CGCGCCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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