Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23985 | 5' | -60.8 | NC_005262.1 | + | 12168 | 1.1 | 0.000303 |
Target: 5'- uGAAGGCCGCGCUGUCUGCGCGGCAGGa -3' miRNA: 3'- -CUUCCGGCGCGACAGACGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 10708 | 0.67 | 0.375122 |
Target: 5'- cGAGGCCGCGCgca---CGCGGCcGGc -3' miRNA: 3'- cUUCCGGCGCGacagacGCGCCGuCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 41285 | 0.67 | 0.384475 |
Target: 5'- --cGGCCGCGCgugggcgacaucaagGUaugGCGCGGCGc- -3' miRNA: 3'- cuuCCGGCGCGa--------------CAga-CGCGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 4581 | 0.67 | 0.417947 |
Target: 5'- --cGGCgGCGCUGcUCggGCGUGagcgcccGCAGGa -3' miRNA: 3'- cuuCCGgCGCGAC-AGa-CGCGC-------CGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 5045 | 0.66 | 0.446531 |
Target: 5'- --cGGCCgGCGcCUGaUCgGCG-GGCAGGc -3' miRNA: 3'- cuuCCGG-CGC-GAC-AGaCGCgCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 45315 | 0.66 | 0.446531 |
Target: 5'- cAAGGCUacaacgGCGCgaugcaagGUCUGCaagGCGGCGcGGg -3' miRNA: 3'- cUUCCGG------CGCGa-------CAGACG---CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 28281 | 0.66 | 0.455981 |
Target: 5'- --cGGCCgGCGCUGUCgccuaUGCGC-GCAa- -3' miRNA: 3'- cuuCCGG-CGCGACAG-----ACGCGcCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 56435 | 0.66 | 0.455981 |
Target: 5'- cGAGGGCaaaaaGCGCgugCUGaucgGCGGCAaGGa -3' miRNA: 3'- -CUUCCGg----CGCGacaGACg---CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 5139 | 0.66 | 0.465539 |
Target: 5'- -cGGGCgGCGCUGaucCUGCuCGGCGc- -3' miRNA: 3'- cuUCCGgCGCGACa--GACGcGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 15391 | 0.68 | 0.326874 |
Target: 5'- cGggGGUuugacugaugCGCGCUGcugcugaucuUCUGgGCGGgGGGa -3' miRNA: 3'- -CuuCCG----------GCGCGAC----------AGACgCGCCgUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 42253 | 0.7 | 0.276593 |
Target: 5'- cGAGcGCCGCGCUcaCUGCggcgacgaGCGGCAcGGg -3' miRNA: 3'- cUUC-CGGCGCGAcaGACG--------CGCCGU-CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 17102 | 0.7 | 0.25074 |
Target: 5'- -cGGGCCGCGaggagGUCcaccGCGCGGCGauGGa -3' miRNA: 3'- cuUCCGGCGCga---CAGa---CGCGCCGU--CC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 44978 | 0.81 | 0.043712 |
Target: 5'- cGAGGGCCGaCGUgcagcaGUCcGCGCGGCAGGc -3' miRNA: 3'- -CUUCCGGC-GCGa-----CAGaCGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 10963 | 0.74 | 0.131396 |
Target: 5'- -cAGGCauuCGCGCUGUCgGCGCGcCGGGa -3' miRNA: 3'- cuUCCG---GCGCGACAGaCGCGCcGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 43842 | 0.74 | 0.134951 |
Target: 5'- --cGGCCGCGCgcgGcggUGCGcCGGCAGGa -3' miRNA: 3'- cuuCCGGCGCGa--Cag-ACGC-GCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 13147 | 0.73 | 0.158197 |
Target: 5'- ---cGCCGCGCgcgCUGCGCGGCAc- -3' miRNA: 3'- cuucCGGCGCGacaGACGCGCCGUcc -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 15586 | 0.72 | 0.18984 |
Target: 5'- uGGAGGCgCGCGCgcgCgaggagcgcGUGCGGCAGGa -3' miRNA: 3'- -CUUCCG-GCGCGacaGa--------CGCGCCGUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 50429 | 0.71 | 0.215734 |
Target: 5'- cGAGGGCCGCGUgcacGUCgucgugccGCGCGaGgAGGa -3' miRNA: 3'- -CUUCCGGCGCGa---CAGa-------CGCGC-CgUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 40476 | 0.71 | 0.232684 |
Target: 5'- -uGGGCCGgGCUGguaUCUG-GCGGaCGGGc -3' miRNA: 3'- cuUCCGGCgCGAC---AGACgCGCC-GUCC- -5' |
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23985 | 5' | -60.8 | NC_005262.1 | + | 52722 | 0.71 | 0.238578 |
Target: 5'- cGAGGCCGCGCUG-CUGaCGaaguucacgGGCuGGg -3' miRNA: 3'- cUUCCGGCGCGACaGAC-GCg--------CCGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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