Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23986 | 3' | -57.4 | NC_005262.1 | + | 58547 | 0.68 | 0.549047 |
Target: 5'- uCCgaCGUCGuGACGcCGCgCAcgccugcCGGGGCg -3' miRNA: 3'- -GGa-GCAGCuCUGCaGCGaGU-------GCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 51955 | 0.69 | 0.519597 |
Target: 5'- gCUCgGUCGuGcucGCGUCGUUCGCGGcGCc -3' miRNA: 3'- gGAG-CAGCuC---UGCAGCGAGUGCCcCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 32918 | 0.69 | 0.499653 |
Target: 5'- aCCUUGUCGccGACGUCGCcggaCAUGaGGCc -3' miRNA: 3'- -GGAGCAGCu-CUGCAGCGa---GUGCcCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 27613 | 0.7 | 0.470398 |
Target: 5'- cCCUCGUCGGuGCG-CGCgggCACGagcuGGGUg -3' miRNA: 3'- -GGAGCAGCUcUGCaGCGa--GUGC----CCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 27652 | 0.7 | 0.460841 |
Target: 5'- uUCUCGcgcugCGcGGCGUC-CUCGcCGGGGCu -3' miRNA: 3'- -GGAGCa----GCuCUGCAGcGAGU-GCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 48151 | 0.71 | 0.40933 |
Target: 5'- gCUCGUCGcggcaggugcgaccGACG-CGCUUGCGGGcGCg -3' miRNA: 3'- gGAGCAGCu-------------CUGCaGCGAGUGCCC-CG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 32848 | 0.72 | 0.371464 |
Target: 5'- gCUUGUCGGcGaucagcaccGCGUCGCUCACGGaguggucggccGGCa -3' miRNA: 3'- gGAGCAGCU-C---------UGCAGCGAGUGCC-----------CCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 56461 | 0.74 | 0.28769 |
Target: 5'- uCCUUGUUGucGCGcaugaacgcgaUCuGCUCGCGGGGCa -3' miRNA: 3'- -GGAGCAGCucUGC-----------AG-CGAGUGCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 48971 | 0.68 | 0.581076 |
Target: 5'- cCCUUGcCGGucacGACGUCGgacaguugCGCGGGGUg -3' miRNA: 3'- -GGAGCaGCU----CUGCAGCga------GUGCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 54307 | 0.68 | 0.591497 |
Target: 5'- gUUCGUCGucuuGAUcUCcgGCUCGCGcGGGCg -3' miRNA: 3'- gGAGCAGCu---CUGcAG--CGAGUGC-CCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 54774 | 0.67 | 0.611376 |
Target: 5'- aCCgCGUCGAGAaucuggcCGgCGUUCAucuuCGGGGUg -3' miRNA: 3'- -GGaGCAGCUCU-------GCaGCGAGU----GCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 29197 | 0.66 | 0.726767 |
Target: 5'- cCUUCGUgcgCGuGAUGUCGUUCuc-GGGCa -3' miRNA: 3'- -GGAGCA---GCuCUGCAGCGAGugcCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 62885 | 0.66 | 0.726767 |
Target: 5'- cCUUCGUCGGGAUuucCGCUUuCGGcGCg -3' miRNA: 3'- -GGAGCAGCUCUGca-GCGAGuGCCcCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 2654 | 0.66 | 0.716608 |
Target: 5'- gCUCGUcucCGAGACGUU-CUCGCGGa-- -3' miRNA: 3'- gGAGCA---GCUCUGCAGcGAGUGCCccg -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 23404 | 0.66 | 0.716608 |
Target: 5'- gCUCGUgCGcGGCGccuugaugCGCUUgauggcgaacgACGGGGCg -3' miRNA: 3'- gGAGCA-GCuCUGCa-------GCGAG-----------UGCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 17102 | 0.66 | 0.706373 |
Target: 5'- gCCUCgGUCGAcuucagcacGACGagcgcgCGCUCGgcCGGcGGCa -3' miRNA: 3'- -GGAG-CAGCU---------CUGCa-----GCGAGU--GCC-CCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 11958 | 0.66 | 0.696072 |
Target: 5'- uUUCGcgCGAuacACGUCGCcgacaGCGGGGCc -3' miRNA: 3'- gGAGCa-GCUc--UGCAGCGag---UGCCCCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 33894 | 0.67 | 0.664869 |
Target: 5'- uCCUCGUCcuggaGGACGUUGCcCGCGcGaGCg -3' miRNA: 3'- -GGAGCAGc----UCUGCAGCGaGUGC-CcCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 48693 | 0.67 | 0.6544 |
Target: 5'- uCCUCGUCGAGcuGCGaUUGCagGCcgaGGcGGCu -3' miRNA: 3'- -GGAGCAGCUC--UGC-AGCGagUG---CC-CCG- -5' |
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23986 | 3' | -57.4 | NC_005262.1 | + | 46645 | 0.75 | 0.230792 |
Target: 5'- -gUCGUCGuGGGCGUCGCgggaGCGGcGGCc -3' miRNA: 3'- ggAGCAGC-UCUGCAGCGag--UGCC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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