miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23986 5' -53.1 NC_005262.1 + 51280 0.66 0.84259
Target:  5'- -cGCGCGGcuccAGCGGGccGCCGCGUcgUCg -3'
miRNA:   3'- uaUGCGUCac--UCGCUU--UGGCGCGa-AG- -5'
23986 5' -53.1 NC_005262.1 + 51191 0.66 0.833585
Target:  5'- -gACGCGGcGGcccGCuGGAGCCGCGCg-- -3'
miRNA:   3'- uaUGCGUCaCU---CG-CUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 55624 0.66 0.833585
Target:  5'- cUGCGCAGcaaGaAGCcGGGCCGCGCg-- -3'
miRNA:   3'- uAUGCGUCa--C-UCGcUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 2807 0.66 0.833585
Target:  5'- -gGCGCAGggcGAGCGcuACCGCa---- -3'
miRNA:   3'- uaUGCGUCa--CUCGCuuUGGCGcgaag -5'
23986 5' -53.1 NC_005262.1 + 52713 0.66 0.824358
Target:  5'- -gACGCcg-GA-CGAGGCCGCGCUg- -3'
miRNA:   3'- uaUGCGucaCUcGCUUUGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 50373 0.66 0.81492
Target:  5'- -gGCGCAuucgucgaccGUG-GCGAcgcgAACCGCGCggCg -3'
miRNA:   3'- uaUGCGU----------CACuCGCU----UUGGCGCGaaG- -5'
23986 5' -53.1 NC_005262.1 + 57949 0.66 0.81492
Target:  5'- -aACGUGGaGGGCGcGAgCGCGCUUg -3'
miRNA:   3'- uaUGCGUCaCUCGCuUUgGCGCGAAg -5'
23986 5' -53.1 NC_005262.1 + 48548 0.66 0.81492
Target:  5'- gAUGCGCAG-GAGCcGGGCCGCu---- -3'
miRNA:   3'- -UAUGCGUCaCUCGcUUUGGCGcgaag -5'
23986 5' -53.1 NC_005262.1 + 12698 0.66 0.805283
Target:  5'- -aAUGCGGcGAGgGAGGgCGCGCUcaUCc -3'
miRNA:   3'- uaUGCGUCaCUCgCUUUgGCGCGA--AG- -5'
23986 5' -53.1 NC_005262.1 + 40096 0.66 0.805283
Target:  5'- -aAUGCAGUuGGCGuucucgcuGCUGCGCUUg -3'
miRNA:   3'- uaUGCGUCAcUCGCuu------UGGCGCGAAg -5'
23986 5' -53.1 NC_005262.1 + 23640 0.67 0.799409
Target:  5'- -cGCGCGGcGGGCGGuuggucagucugcgcGGuccucCCGCGCUUCc -3'
miRNA:   3'- uaUGCGUCaCUCGCU---------------UU-----GGCGCGAAG- -5'
23986 5' -53.1 NC_005262.1 + 13037 0.67 0.795456
Target:  5'- cUACGCGGUGcGCGucGAGCUGCGg--- -3'
miRNA:   3'- uAUGCGUCACuCGC--UUUGGCGCgaag -5'
23986 5' -53.1 NC_005262.1 + 60482 0.67 0.784441
Target:  5'- cUGCGCGaucaGGGCGAGacgccggGCCGCGCggCg -3'
miRNA:   3'- uAUGCGUca--CUCGCUU-------UGGCGCGaaG- -5'
23986 5' -53.1 NC_005262.1 + 15311 0.67 0.775281
Target:  5'- -cGCGCA-UGGGCGGgcGGCCGUcgagcaacaGCUUCg -3'
miRNA:   3'- uaUGCGUcACUCGCU--UUGGCG---------CGAAG- -5'
23986 5' -53.1 NC_005262.1 + 22330 0.67 0.775281
Target:  5'- gAUGCGCAggccggccggcGUGGGCGGcgcGGCCGUgaGCUUg -3'
miRNA:   3'- -UAUGCGU-----------CACUCGCU---UUGGCG--CGAAg -5'
23986 5' -53.1 NC_005262.1 + 46632 0.67 0.764955
Target:  5'- --uCGCGG-GAGCGGcggccggcGCCGCGCUg- -3'
miRNA:   3'- uauGCGUCaCUCGCUu-------UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 43792 0.67 0.764955
Target:  5'- --uUGuCGGUGAGCGcgucGCCGCGCg-- -3'
miRNA:   3'- uauGC-GUCACUCGCuu--UGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 40936 0.67 0.764955
Target:  5'- aGUACGUGG-GAGCGuGACCaugGCGCUc- -3'
miRNA:   3'- -UAUGCGUCaCUCGCuUUGG---CGCGAag -5'
23986 5' -53.1 NC_005262.1 + 12122 0.67 0.754488
Target:  5'- cGUGCGCGc-GAGCaGAucGCCGCGCUg- -3'
miRNA:   3'- -UAUGCGUcaCUCG-CUu-UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 49026 0.67 0.74389
Target:  5'- -gGCGaccaucUGGGCGguAUCGCGCUUCa -3'
miRNA:   3'- uaUGCguc---ACUCGCuuUGGCGCGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.