Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23986 | 5' | -53.1 | NC_005262.1 | + | 12492 | 1.09 | 0.001743 |
Target: 5'- cAUACGCAGUGAGCGAAACCGCGCUUCa -3' miRNA: 3'- -UAUGCGUCACUCGCUUUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 15582 | 0.77 | 0.249304 |
Target: 5'- -cGC-CGGUGAGCGAGccGCCGCGCUc- -3' miRNA: 3'- uaUGcGUCACUCGCUU--UGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 59264 | 0.77 | 0.255952 |
Target: 5'- -cGCGCAG-GAGCGAAACgaGCGCgUCg -3' miRNA: 3'- uaUGCGUCaCUCGCUUUGg-CGCGaAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 56290 | 0.73 | 0.449531 |
Target: 5'- ---aGCAGUcGGCGAagAACCGCgGCUUCg -3' miRNA: 3'- uaugCGUCAcUCGCU--UUGGCG-CGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 51942 | 0.72 | 0.459633 |
Target: 5'- -cGCGUcGUucGCGgcGCCGCGCUUCa -3' miRNA: 3'- uaUGCGuCAcuCGCuuUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 16587 | 0.72 | 0.480189 |
Target: 5'- -gGCGCGuGUGcuggucgaggcGGCGAAgcaGCCGCGUUUCg -3' miRNA: 3'- uaUGCGU-CAC-----------UCGCUU---UGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 54121 | 0.72 | 0.480189 |
Target: 5'- cGUGCGCucgauGGUGcuguaGGCGAGcagguuGCCGUGCUUCg -3' miRNA: 3'- -UAUGCG-----UCAC-----UCGCUU------UGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 21674 | 0.71 | 0.533399 |
Target: 5'- -cGCGCAaccUGAGCGGcggcGCCGCGCUg- -3' miRNA: 3'- uaUGCGUc--ACUCGCUu---UGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 47781 | 0.71 | 0.533399 |
Target: 5'- -gGCGCGGUGcuuGGCGucAGACCGCcguagaucaGCUUCa -3' miRNA: 3'- uaUGCGUCAC---UCGC--UUUGGCG---------CGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 42336 | 0.71 | 0.548687 |
Target: 5'- --cCGCAGUGAGCGcggcgcucggcaucgGAACCGCGag-Cg -3' miRNA: 3'- uauGCGUCACUCGC---------------UUUGGCGCgaaG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 5643 | 0.7 | 0.566322 |
Target: 5'- cGUGCGUGGUGA-CGAu-CCGCGCaUCg -3' miRNA: 3'- -UAUGCGUCACUcGCUuuGGCGCGaAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 10697 | 0.7 | 0.588561 |
Target: 5'- cAUGCGCAGau--CGAGGCCGCGCg-- -3' miRNA: 3'- -UAUGCGUCacucGCUUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 51438 | 0.7 | 0.599743 |
Target: 5'- -gGCGCGGUGccgagcugcauGGCGGAuucgaucuuGCCGCGCg-- -3' miRNA: 3'- uaUGCGUCAC-----------UCGCUU---------UGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 11483 | 0.69 | 0.644659 |
Target: 5'- -gGCGCGGcuucgGcGUGGAGCCGCGCg-- -3' miRNA: 3'- uaUGCGUCa----CuCGCUUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 54930 | 0.69 | 0.667086 |
Target: 5'- -gACGCuGccGGGCGugucGCUGCGCUUCa -3' miRNA: 3'- uaUGCGuCa-CUCGCuu--UGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12924 | 0.69 | 0.667086 |
Target: 5'- -cACGaCGGUucccGCGAGGCCGCGCUc- -3' miRNA: 3'- uaUGC-GUCAcu--CGCUUUGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12183 | 0.69 | 0.678255 |
Target: 5'- cUGCGCGGcagGAGC-AAAUCGCGCa-- -3' miRNA: 3'- uAUGCGUCa--CUCGcUUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12966 | 0.68 | 0.700443 |
Target: 5'- gAUGCGCAc-GAGCGucACCGUGCa-- -3' miRNA: 3'- -UAUGCGUcaCUCGCuuUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 29833 | 0.68 | 0.711439 |
Target: 5'- -gAgGCGGguuagccggGAGCGccGGCUGCGCUUCg -3' miRNA: 3'- uaUgCGUCa--------CUCGCu-UUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 53426 | 0.68 | 0.722353 |
Target: 5'- -cGCGCGGUcGGCGAgguAGCgGCGCg-- -3' miRNA: 3'- uaUGCGUCAcUCGCU---UUGgCGCGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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