miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23986 5' -53.1 NC_005262.1 + 2807 0.66 0.833585
Target:  5'- -gGCGCAGggcGAGCGcuACCGCa---- -3'
miRNA:   3'- uaUGCGUCa--CUCGCuuUGGCGcgaag -5'
23986 5' -53.1 NC_005262.1 + 5643 0.7 0.566322
Target:  5'- cGUGCGUGGUGA-CGAu-CCGCGCaUCg -3'
miRNA:   3'- -UAUGCGUCACUcGCUuuGGCGCGaAG- -5'
23986 5' -53.1 NC_005262.1 + 10697 0.7 0.588561
Target:  5'- cAUGCGCAGau--CGAGGCCGCGCg-- -3'
miRNA:   3'- -UAUGCGUCacucGCUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 11483 0.69 0.644659
Target:  5'- -gGCGCGGcuucgGcGUGGAGCCGCGCg-- -3'
miRNA:   3'- uaUGCGUCa----CuCGCUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 12122 0.67 0.754488
Target:  5'- cGUGCGCGc-GAGCaGAucGCCGCGCUg- -3'
miRNA:   3'- -UAUGCGUcaCUCG-CUu-UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 12183 0.69 0.678255
Target:  5'- cUGCGCGGcagGAGC-AAAUCGCGCa-- -3'
miRNA:   3'- uAUGCGUCa--CUCGcUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 12492 1.09 0.001743
Target:  5'- cAUACGCAGUGAGCGAAACCGCGCUUCa -3'
miRNA:   3'- -UAUGCGUCACUCGCUUUGGCGCGAAG- -5'
23986 5' -53.1 NC_005262.1 + 12698 0.66 0.805283
Target:  5'- -aAUGCGGcGAGgGAGGgCGCGCUcaUCc -3'
miRNA:   3'- uaUGCGUCaCUCgCUUUgGCGCGA--AG- -5'
23986 5' -53.1 NC_005262.1 + 12924 0.69 0.667086
Target:  5'- -cACGaCGGUucccGCGAGGCCGCGCUc- -3'
miRNA:   3'- uaUGC-GUCAcu--CGCUUUGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 12966 0.68 0.700443
Target:  5'- gAUGCGCAc-GAGCGucACCGUGCa-- -3'
miRNA:   3'- -UAUGCGUcaCUCGCuuUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 13037 0.67 0.795456
Target:  5'- cUACGCGGUGcGCGucGAGCUGCGg--- -3'
miRNA:   3'- uAUGCGUCACuCGC--UUUGGCGCgaag -5'
23986 5' -53.1 NC_005262.1 + 15311 0.67 0.775281
Target:  5'- -cGCGCA-UGGGCGGgcGGCCGUcgagcaacaGCUUCg -3'
miRNA:   3'- uaUGCGUcACUCGCU--UUGGCG---------CGAAG- -5'
23986 5' -53.1 NC_005262.1 + 15582 0.77 0.249304
Target:  5'- -cGC-CGGUGAGCGAGccGCCGCGCUc- -3'
miRNA:   3'- uaUGcGUCACUCGCUU--UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 16587 0.72 0.480189
Target:  5'- -gGCGCGuGUGcuggucgaggcGGCGAAgcaGCCGCGUUUCg -3'
miRNA:   3'- uaUGCGU-CAC-----------UCGCUU---UGGCGCGAAG- -5'
23986 5' -53.1 NC_005262.1 + 21674 0.71 0.533399
Target:  5'- -cGCGCAaccUGAGCGGcggcGCCGCGCUg- -3'
miRNA:   3'- uaUGCGUc--ACUCGCUu---UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 22330 0.67 0.775281
Target:  5'- gAUGCGCAggccggccggcGUGGGCGGcgcGGCCGUgaGCUUg -3'
miRNA:   3'- -UAUGCGU-----------CACUCGCU---UUGGCG--CGAAg -5'
23986 5' -53.1 NC_005262.1 + 23640 0.67 0.799409
Target:  5'- -cGCGCGGcGGGCGGuuggucagucugcgcGGuccucCCGCGCUUCc -3'
miRNA:   3'- uaUGCGUCaCUCGCU---------------UU-----GGCGCGAAG- -5'
23986 5' -53.1 NC_005262.1 + 28697 0.68 0.732097
Target:  5'- -gGCGCGGUcgacgauaucgacGAguuccgccGCGAGGCCGCGCg-- -3'
miRNA:   3'- uaUGCGUCA-------------CU--------CGCUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 29772 0.67 0.74389
Target:  5'- uUGCGCAGgauucgcggguUGGGCG-GGCUGCGCg-- -3'
miRNA:   3'- uAUGCGUC-----------ACUCGCuUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 29833 0.68 0.711439
Target:  5'- -gAgGCGGguuagccggGAGCGccGGCUGCGCUUCg -3'
miRNA:   3'- uaUgCGUCa--------CUCGCu-UUGGCGCGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.