Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23986 | 5' | -53.1 | NC_005262.1 | + | 40936 | 0.67 | 0.764955 |
Target: 5'- aGUACGUGG-GAGCGuGACCaugGCGCUc- -3' miRNA: 3'- -UAUGCGUCaCUCGCuUUGG---CGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 40096 | 0.66 | 0.805283 |
Target: 5'- -aAUGCAGUuGGCGuucucgcuGCUGCGCUUg -3' miRNA: 3'- uaUGCGUCAcUCGCuu------UGGCGCGAAg -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 33751 | 0.68 | 0.733175 |
Target: 5'- uGUACGCGGcGAccaGCGAGG-CGCGCUcgUCa -3' miRNA: 3'- -UAUGCGUCaCU---CGCUUUgGCGCGA--AG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 29833 | 0.68 | 0.711439 |
Target: 5'- -gAgGCGGguuagccggGAGCGccGGCUGCGCUUCg -3' miRNA: 3'- uaUgCGUCa--------CUCGCu-UUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 29772 | 0.67 | 0.74389 |
Target: 5'- uUGCGCAGgauucgcggguUGGGCG-GGCUGCGCg-- -3' miRNA: 3'- uAUGCGUC-----------ACUCGCuUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 28697 | 0.68 | 0.732097 |
Target: 5'- -gGCGCGGUcgacgauaucgacGAguuccgccGCGAGGCCGCGCg-- -3' miRNA: 3'- uaUGCGUCA-------------CU--------CGCUUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 23640 | 0.67 | 0.799409 |
Target: 5'- -cGCGCGGcGGGCGGuuggucagucugcgcGGuccucCCGCGCUUCc -3' miRNA: 3'- uaUGCGUCaCUCGCU---------------UU-----GGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 22330 | 0.67 | 0.775281 |
Target: 5'- gAUGCGCAggccggccggcGUGGGCGGcgcGGCCGUgaGCUUg -3' miRNA: 3'- -UAUGCGU-----------CACUCGCU---UUGGCG--CGAAg -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 21674 | 0.71 | 0.533399 |
Target: 5'- -cGCGCAaccUGAGCGGcggcGCCGCGCUg- -3' miRNA: 3'- uaUGCGUc--ACUCGCUu---UGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 16587 | 0.72 | 0.480189 |
Target: 5'- -gGCGCGuGUGcuggucgaggcGGCGAAgcaGCCGCGUUUCg -3' miRNA: 3'- uaUGCGU-CAC-----------UCGCUU---UGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 15582 | 0.77 | 0.249304 |
Target: 5'- -cGC-CGGUGAGCGAGccGCCGCGCUc- -3' miRNA: 3'- uaUGcGUCACUCGCUU--UGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 15311 | 0.67 | 0.775281 |
Target: 5'- -cGCGCA-UGGGCGGgcGGCCGUcgagcaacaGCUUCg -3' miRNA: 3'- uaUGCGUcACUCGCU--UUGGCG---------CGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 13037 | 0.67 | 0.795456 |
Target: 5'- cUACGCGGUGcGCGucGAGCUGCGg--- -3' miRNA: 3'- uAUGCGUCACuCGC--UUUGGCGCgaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12966 | 0.68 | 0.700443 |
Target: 5'- gAUGCGCAc-GAGCGucACCGUGCa-- -3' miRNA: 3'- -UAUGCGUcaCUCGCuuUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12924 | 0.69 | 0.667086 |
Target: 5'- -cACGaCGGUucccGCGAGGCCGCGCUc- -3' miRNA: 3'- uaUGC-GUCAcu--CGCUUUGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12698 | 0.66 | 0.805283 |
Target: 5'- -aAUGCGGcGAGgGAGGgCGCGCUcaUCc -3' miRNA: 3'- uaUGCGUCaCUCgCUUUgGCGCGA--AG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12492 | 1.09 | 0.001743 |
Target: 5'- cAUACGCAGUGAGCGAAACCGCGCUUCa -3' miRNA: 3'- -UAUGCGUCACUCGCUUUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12183 | 0.69 | 0.678255 |
Target: 5'- cUGCGCGGcagGAGC-AAAUCGCGCa-- -3' miRNA: 3'- uAUGCGUCa--CUCGcUUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12122 | 0.67 | 0.754488 |
Target: 5'- cGUGCGCGc-GAGCaGAucGCCGCGCUg- -3' miRNA: 3'- -UAUGCGUcaCUCG-CUu-UGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 11483 | 0.69 | 0.644659 |
Target: 5'- -gGCGCGGcuucgGcGUGGAGCCGCGCg-- -3' miRNA: 3'- uaUGCGUCa----CuCGCUUUGGCGCGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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