miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23986 5' -53.1 NC_005262.1 + 55624 0.66 0.833585
Target:  5'- cUGCGCAGcaaGaAGCcGGGCCGCGCg-- -3'
miRNA:   3'- uAUGCGUCa--C-UCGcUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 60482 0.67 0.784441
Target:  5'- cUGCGCGaucaGGGCGAGacgccggGCCGCGCggCg -3'
miRNA:   3'- uAUGCGUca--CUCGCUU-------UGGCGCGaaG- -5'
23986 5' -53.1 NC_005262.1 + 13037 0.67 0.795456
Target:  5'- cUACGCGGUGcGCGucGAGCUGCGg--- -3'
miRNA:   3'- uAUGCGUCACuCGC--UUUGGCGCgaag -5'
23986 5' -53.1 NC_005262.1 + 40096 0.66 0.805283
Target:  5'- -aAUGCAGUuGGCGuucucgcuGCUGCGCUUg -3'
miRNA:   3'- uaUGCGUCAcUCGCuu------UGGCGCGAAg -5'
23986 5' -53.1 NC_005262.1 + 48548 0.66 0.81492
Target:  5'- gAUGCGCAG-GAGCcGGGCCGCu---- -3'
miRNA:   3'- -UAUGCGUCaCUCGcUUUGGCGcgaag -5'
23986 5' -53.1 NC_005262.1 + 57949 0.66 0.81492
Target:  5'- -aACGUGGaGGGCGcGAgCGCGCUUg -3'
miRNA:   3'- uaUGCGUCaCUCGCuUUgGCGCGAAg -5'
23986 5' -53.1 NC_005262.1 + 50373 0.66 0.81492
Target:  5'- -gGCGCAuucgucgaccGUG-GCGAcgcgAACCGCGCggCg -3'
miRNA:   3'- uaUGCGU----------CACuCGCU----UUGGCGCGaaG- -5'
23986 5' -53.1 NC_005262.1 + 52713 0.66 0.824358
Target:  5'- -gACGCcg-GA-CGAGGCCGCGCUg- -3'
miRNA:   3'- uaUGCGucaCUcGCUUUGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 51191 0.66 0.833585
Target:  5'- -gACGCGGcGGcccGCuGGAGCCGCGCg-- -3'
miRNA:   3'- uaUGCGUCaCU---CG-CUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 15311 0.67 0.775281
Target:  5'- -cGCGCA-UGGGCGGgcGGCCGUcgagcaacaGCUUCg -3'
miRNA:   3'- uaUGCGUcACUCGCU--UUGGCG---------CGAAG- -5'
23986 5' -53.1 NC_005262.1 + 40936 0.67 0.764955
Target:  5'- aGUACGUGG-GAGCGuGACCaugGCGCUc- -3'
miRNA:   3'- -UAUGCGUCaCUCGCuUUGG---CGCGAag -5'
23986 5' -53.1 NC_005262.1 + 12122 0.67 0.754488
Target:  5'- cGUGCGCGc-GAGCaGAucGCCGCGCUg- -3'
miRNA:   3'- -UAUGCGUcaCUCG-CUu-UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 59264 0.77 0.255952
Target:  5'- -cGCGCAG-GAGCGAAACgaGCGCgUCg -3'
miRNA:   3'- uaUGCGUCaCUCGCUUUGg-CGCGaAG- -5'
23986 5' -53.1 NC_005262.1 + 56290 0.73 0.449531
Target:  5'- ---aGCAGUcGGCGAagAACCGCgGCUUCg -3'
miRNA:   3'- uaugCGUCAcUCGCU--UUGGCG-CGAAG- -5'
23986 5' -53.1 NC_005262.1 + 16587 0.72 0.480189
Target:  5'- -gGCGCGuGUGcuggucgaggcGGCGAAgcaGCCGCGUUUCg -3'
miRNA:   3'- uaUGCGU-CAC-----------UCGCUU---UGGCGCGAAG- -5'
23986 5' -53.1 NC_005262.1 + 21674 0.71 0.533399
Target:  5'- -cGCGCAaccUGAGCGGcggcGCCGCGCUg- -3'
miRNA:   3'- uaUGCGUc--ACUCGCUu---UGGCGCGAag -5'
23986 5' -53.1 NC_005262.1 + 10697 0.7 0.588561
Target:  5'- cAUGCGCAGau--CGAGGCCGCGCg-- -3'
miRNA:   3'- -UAUGCGUCacucGCUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 54930 0.69 0.667086
Target:  5'- -gACGCuGccGGGCGugucGCUGCGCUUCa -3'
miRNA:   3'- uaUGCGuCa-CUCGCuu--UGGCGCGAAG- -5'
23986 5' -53.1 NC_005262.1 + 12183 0.69 0.678255
Target:  5'- cUGCGCGGcagGAGC-AAAUCGCGCa-- -3'
miRNA:   3'- uAUGCGUCa--CUCGcUUUGGCGCGaag -5'
23986 5' -53.1 NC_005262.1 + 28697 0.68 0.732097
Target:  5'- -gGCGCGGUcgacgauaucgacGAguuccgccGCGAGGCCGCGCg-- -3'
miRNA:   3'- uaUGCGUCA-------------CU--------CGCUUUGGCGCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.