Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23986 | 5' | -53.1 | NC_005262.1 | + | 51280 | 0.66 | 0.84259 |
Target: 5'- -cGCGCGGcuccAGCGGGccGCCGCGUcgUCg -3' miRNA: 3'- uaUGCGUCac--UCGCUU--UGGCGCGa-AG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 42336 | 0.71 | 0.548687 |
Target: 5'- --cCGCAGUGAGCGcggcgcucggcaucgGAACCGCGag-Cg -3' miRNA: 3'- uauGCGUCACUCGC---------------UUUGGCGCgaaG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 54121 | 0.72 | 0.480189 |
Target: 5'- cGUGCGCucgauGGUGcuguaGGCGAGcagguuGCCGUGCUUCg -3' miRNA: 3'- -UAUGCG-----UCAC-----UCGCUU------UGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 15582 | 0.77 | 0.249304 |
Target: 5'- -cGC-CGGUGAGCGAGccGCCGCGCUc- -3' miRNA: 3'- uaUGcGUCACUCGCUU--UGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 22330 | 0.67 | 0.775281 |
Target: 5'- gAUGCGCAggccggccggcGUGGGCGGcgcGGCCGUgaGCUUg -3' miRNA: 3'- -UAUGCGU-----------CACUCGCU---UUGGCG--CGAAg -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 43792 | 0.67 | 0.764955 |
Target: 5'- --uUGuCGGUGAGCGcgucGCCGCGCg-- -3' miRNA: 3'- uauGC-GUCACUCGCuu--UGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 49026 | 0.67 | 0.74389 |
Target: 5'- -gGCGaccaucUGGGCGguAUCGCGCUUCa -3' miRNA: 3'- uaUGCguc---ACUCGCuuUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 29772 | 0.67 | 0.74389 |
Target: 5'- uUGCGCAGgauucgcggguUGGGCG-GGCUGCGCg-- -3' miRNA: 3'- uAUGCGUC-----------ACUCGCuUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 29833 | 0.68 | 0.711439 |
Target: 5'- -gAgGCGGguuagccggGAGCGccGGCUGCGCUUCg -3' miRNA: 3'- uaUgCGUCa--------CUCGCu-UUGGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 5643 | 0.7 | 0.566322 |
Target: 5'- cGUGCGUGGUGA-CGAu-CCGCGCaUCg -3' miRNA: 3'- -UAUGCGUCACUcGCUuuGGCGCGaAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12924 | 0.69 | 0.667086 |
Target: 5'- -cACGaCGGUucccGCGAGGCCGCGCUc- -3' miRNA: 3'- uaUGC-GUCAcu--CGCUUUGGCGCGAag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 53426 | 0.68 | 0.722353 |
Target: 5'- -cGCGCGGUcGGCGAgguAGCgGCGCg-- -3' miRNA: 3'- uaUGCGUCAcUCGCU---UUGgCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 12698 | 0.66 | 0.805283 |
Target: 5'- -aAUGCGGcGAGgGAGGgCGCGCUcaUCc -3' miRNA: 3'- uaUGCGUCaCUCgCUUUgGCGCGA--AG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 11483 | 0.69 | 0.644659 |
Target: 5'- -gGCGCGGcuucgGcGUGGAGCCGCGCg-- -3' miRNA: 3'- uaUGCGUCa----CuCGCUUUGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 2807 | 0.66 | 0.833585 |
Target: 5'- -gGCGCAGggcGAGCGcuACCGCa---- -3' miRNA: 3'- uaUGCGUCa--CUCGCuuUGGCGcgaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 33751 | 0.68 | 0.733175 |
Target: 5'- uGUACGCGGcGAccaGCGAGG-CGCGCUcgUCa -3' miRNA: 3'- -UAUGCGUCaCU---CGCUUUgGCGCGA--AG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 51438 | 0.7 | 0.599743 |
Target: 5'- -gGCGCGGUGccgagcugcauGGCGGAuucgaucuuGCCGCGCg-- -3' miRNA: 3'- uaUGCGUCAC-----------UCGCUU---------UGGCGCGaag -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 47781 | 0.71 | 0.533399 |
Target: 5'- -gGCGCGGUGcuuGGCGucAGACCGCcguagaucaGCUUCa -3' miRNA: 3'- uaUGCGUCAC---UCGC--UUUGGCG---------CGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 23640 | 0.67 | 0.799409 |
Target: 5'- -cGCGCGGcGGGCGGuuggucagucugcgcGGuccucCCGCGCUUCc -3' miRNA: 3'- uaUGCGUCaCUCGCU---------------UU-----GGCGCGAAG- -5' |
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23986 | 5' | -53.1 | NC_005262.1 | + | 46632 | 0.67 | 0.764955 |
Target: 5'- --uCGCGG-GAGCGGcggccggcGCCGCGCUg- -3' miRNA: 3'- uauGCGUCaCUCGCUu-------UGGCGCGAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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