miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23987 5' -60.7 NC_005262.1 + 4781 0.66 0.451599
Target:  5'- aGCCUCUCgcaugucgggaUCGGagccggccgcguAGCGCUGguuuCGCCGGCGc -3'
miRNA:   3'- -UGGGGAG-----------AGCU------------UCGCGAC----GCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 7703 0.66 0.451599
Target:  5'- cGCCgCCUcCUCGAGcugcaucuuGCGCUGacCGCuCAGCGu -3'
miRNA:   3'- -UGG-GGA-GAGCUU---------CGCGAC--GCG-GUCGU- -5'
23987 5' -60.7 NC_005262.1 + 8142 0.66 0.451599
Target:  5'- uCCCCacgCUCacccaGAAcgcGCGCUGCGUCAGUc -3'
miRNA:   3'- uGGGGa--GAG-----CUU---CGCGACGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 47429 0.66 0.451599
Target:  5'- gGCCUUUCU---GGCGCUGCGUCucgAGCGc -3'
miRNA:   3'- -UGGGGAGAgcuUCGCGACGCGG---UCGU- -5'
23987 5' -60.7 NC_005262.1 + 27558 0.66 0.442114
Target:  5'- aGCCCCgg-CGAGGaCGCcGCG-CAGCGc -3'
miRNA:   3'- -UGGGGagaGCUUC-GCGaCGCgGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 13316 0.66 0.441172
Target:  5'- cACCCCgagaGGAGCGUUggcggacGCGCCGGUu -3'
miRNA:   3'- -UGGGGagagCUUCGCGA-------CGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 61901 0.66 0.432743
Target:  5'- uGCCUgCUgaCGAuacgccgcAGgGCUGCGCCGGCu -3'
miRNA:   3'- -UGGG-GAgaGCU--------UCgCGACGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 1580 0.66 0.432743
Target:  5'- cUCCCUCcgcaGAugcAGCgGCaGCGCCGGCAg -3'
miRNA:   3'- uGGGGAGag--CU---UCG-CGaCGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 28277 0.66 0.432743
Target:  5'- uGCCCCacgUCUCGAAGUugucgacggccGCcGCGCgCAGUu -3'
miRNA:   3'- -UGGGG---AGAGCUUCG-----------CGaCGCG-GUCGu -5'
23987 5' -60.7 NC_005262.1 + 57011 0.66 0.423489
Target:  5'- uGCgCUUCUCG-AGCGCgGCcuugaucucGCCGGCGa -3'
miRNA:   3'- -UGgGGAGAGCuUCGCGaCG---------CGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 62728 0.66 0.423489
Target:  5'- cACCCUgaUCGgcGCGCUGgCgGUCAGCGc -3'
miRNA:   3'- -UGGGGagAGCuuCGCGAC-G-CGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 40873 0.66 0.42257
Target:  5'- uCCCCguagCg-GAAGCGUUGaucgugcCGCCAGCAu -3'
miRNA:   3'- uGGGGa---GagCUUCGCGAC-------GCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 46519 0.66 0.414355
Target:  5'- cGCCCCUgCcCGcgcagcagcccAGCGCgGCGCCGGCc -3'
miRNA:   3'- -UGGGGA-GaGCu----------UCGCGaCGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 17687 0.66 0.414355
Target:  5'- cGCUCCagCUCcgcGCGCUGCGCCgccAGCu -3'
miRNA:   3'- -UGGGGa-GAGcuuCGCGACGCGG---UCGu -5'
23987 5' -60.7 NC_005262.1 + 50411 0.66 0.414355
Target:  5'- gUCCUgcgCGGcgGGCGCUGCGgCCGGCu -3'
miRNA:   3'- uGGGGagaGCU--UCGCGACGC-GGUCGu -5'
23987 5' -60.7 NC_005262.1 + 49590 0.67 0.405342
Target:  5'- -gCCCUCggCGAucGCGCUGCGC--GCAc -3'
miRNA:   3'- ugGGGAGa-GCUu-CGCGACGCGguCGU- -5'
23987 5' -60.7 NC_005262.1 + 23296 0.67 0.405342
Target:  5'- cGCCCCgucgUUCGccaucAAGCGCaucaagGCGCCGcGCAc -3'
miRNA:   3'- -UGGGGa---GAGC-----UUCGCGa-----CGCGGU-CGU- -5'
23987 5' -60.7 NC_005262.1 + 16616 0.67 0.399994
Target:  5'- aGCCgCgUUUCGAGcugggcgauaucgucGUGCUGCGCgAGCAc -3'
miRNA:   3'- -UGG-GgAGAGCUU---------------CGCGACGCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 34867 0.67 0.396454
Target:  5'- gACCCUcaUCUCGuggGGCGCgcuCGCgAGCAu -3'
miRNA:   3'- -UGGGG--AGAGCu--UCGCGac-GCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 5150 0.67 0.396454
Target:  5'- gAUCCUgCUCGgcGCGCUGaucggugacgGCCGGCGu -3'
miRNA:   3'- -UGGGGaGAGCuuCGCGACg---------CGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.