miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23987 5' -60.7 NC_005262.1 + 695 0.67 0.396454
Target:  5'- cACCUCggcgaguucgUCgUCGAugauguAGCGCuUGUGCCAGCAg -3'
miRNA:   3'- -UGGGG----------AG-AGCU------UCGCG-ACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 1235 0.69 0.285834
Target:  5'- cACCCgUC-CGAAGUGCUucgGCGCUgAGCGg -3'
miRNA:   3'- -UGGGgAGaGCUUCGCGA---CGCGG-UCGU- -5'
23987 5' -60.7 NC_005262.1 + 1580 0.66 0.432743
Target:  5'- cUCCCUCcgcaGAugcAGCgGCaGCGCCGGCAg -3'
miRNA:   3'- uGGGGAGag--CU---UCG-CGaCGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 4781 0.66 0.451599
Target:  5'- aGCCUCUCgcaugucgggaUCGGagccggccgcguAGCGCUGguuuCGCCGGCGc -3'
miRNA:   3'- -UGGGGAG-----------AGCU------------UCGCGAC----GCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 5150 0.67 0.396454
Target:  5'- gAUCCUgCUCGgcGCGCUGaucggugacgGCCGGCGu -3'
miRNA:   3'- -UGGGGaGAGCuuCGCGACg---------CGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 7703 0.66 0.451599
Target:  5'- cGCCgCCUcCUCGAGcugcaucuuGCGCUGacCGCuCAGCGu -3'
miRNA:   3'- -UGG-GGA-GAGCUU---------CGCGAC--GCG-GUCGU- -5'
23987 5' -60.7 NC_005262.1 + 8142 0.66 0.451599
Target:  5'- uCCCCacgCUCacccaGAAcgcGCGCUGCGUCAGUc -3'
miRNA:   3'- uGGGGa--GAG-----CUU---CGCGACGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 13316 0.66 0.441172
Target:  5'- cACCCCgagaGGAGCGUUggcggacGCGCCGGUu -3'
miRNA:   3'- -UGGGGagagCUUCGCGA-------CGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 13350 1.07 0.000419
Target:  5'- cACCCCUCUCGAAGCGCUGCGCCAGCAc -3'
miRNA:   3'- -UGGGGAGAGCUUCGCGACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 16616 0.67 0.399994
Target:  5'- aGCCgCgUUUCGAGcugggcgauaucgucGUGCUGCGCgAGCAc -3'
miRNA:   3'- -UGG-GgAGAGCUU---------------CGCGACGCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 17048 0.67 0.396454
Target:  5'- aGCUCCgcgagCUCGucGCGCgcacgGCGCCgauaGGCGc -3'
miRNA:   3'- -UGGGGa----GAGCuuCGCGa----CGCGG----UCGU- -5'
23987 5' -60.7 NC_005262.1 + 17687 0.66 0.414355
Target:  5'- cGCUCCagCUCcgcGCGCUGCGCCgccAGCu -3'
miRNA:   3'- -UGGGGa-GAGcuuCGCGACGCGG---UCGu -5'
23987 5' -60.7 NC_005262.1 + 22469 0.68 0.314757
Target:  5'- cACCCC-CgagaagcgCGAAGCGCUgaagcuggcGCGCgAGCGg -3'
miRNA:   3'- -UGGGGaGa-------GCUUCGCGA---------CGCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 23022 0.69 0.307324
Target:  5'- cUCCCUCgcgCGGAGCaugGCGUCGGCGa -3'
miRNA:   3'- uGGGGAGa--GCUUCGcgaCGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 23296 0.67 0.405342
Target:  5'- cGCCCCgucgUUCGccaucAAGCGCaucaagGCGCCGcGCAc -3'
miRNA:   3'- -UGGGGa---GAGC-----UUCGCGa-----CGCGGU-CGU- -5'
23987 5' -60.7 NC_005262.1 + 23497 0.73 0.15059
Target:  5'- cGCCCgCUgaCgccCGAGGaGCUGCGCCAGCAg -3'
miRNA:   3'- -UGGG-GA--Ga--GCUUCgCGACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 24184 0.69 0.298583
Target:  5'- uCCCCggcgaguucacgCcCGAGGCggcagccgcgacGCUGCGCCGGCAc -3'
miRNA:   3'- uGGGGa-----------GaGCUUCG------------CGACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 24879 0.69 0.285834
Target:  5'- uGCCCUUCgcgaugUCGAAGUGCUcGC-CCGGCu -3'
miRNA:   3'- -UGGGGAG------AGCUUCGCGA-CGcGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 25448 0.69 0.292863
Target:  5'- aACCUg-CcCGAGGCGCUGCGCgaGGCGa -3'
miRNA:   3'- -UGGGgaGaGCUUCGCGACGCGg-UCGU- -5'
23987 5' -60.7 NC_005262.1 + 26548 0.72 0.167446
Target:  5'- cACUCCgaagCggcCGAcGCGCUGCGCCAGUu -3'
miRNA:   3'- -UGGGGa---Ga--GCUuCGCGACGCGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.