miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23987 5' -60.7 NC_005262.1 + 61901 0.66 0.432743
Target:  5'- uGCCUgCUgaCGAuacgccgcAGgGCUGCGCCGGCu -3'
miRNA:   3'- -UGGG-GAgaGCU--------UCgCGACGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 695 0.67 0.396454
Target:  5'- cACCUCggcgaguucgUCgUCGAugauguAGCGCuUGUGCCAGCAg -3'
miRNA:   3'- -UGGGG----------AG-AGCU------UCGCG-ACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 34867 0.67 0.396454
Target:  5'- gACCCUcaUCUCGuggGGCGCgcuCGCgAGCAu -3'
miRNA:   3'- -UGGGG--AGAGCu--UCGCGac-GCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 5150 0.67 0.396454
Target:  5'- gAUCCUgCUCGgcGCGCUGaucggugacgGCCGGCGu -3'
miRNA:   3'- -UGGGGaGAGCuuCGCGACg---------CGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 17048 0.67 0.396454
Target:  5'- aGCUCCgcgagCUCGucGCGCgcacgGCGCCgauaGGCGc -3'
miRNA:   3'- -UGGGGa----GAGCuuCGCGa----CGCGG----UCGU- -5'
23987 5' -60.7 NC_005262.1 + 16616 0.67 0.399994
Target:  5'- aGCCgCgUUUCGAGcugggcgauaucgucGUGCUGCGCgAGCAc -3'
miRNA:   3'- -UGG-GgAGAGCUU---------------CGCGACGCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 23296 0.67 0.405342
Target:  5'- cGCCCCgucgUUCGccaucAAGCGCaucaagGCGCCGcGCAc -3'
miRNA:   3'- -UGGGGa---GAGC-----UUCGCGa-----CGCGGU-CGU- -5'
23987 5' -60.7 NC_005262.1 + 46519 0.66 0.414355
Target:  5'- cGCCCCUgCcCGcgcagcagcccAGCGCgGCGCCGGCc -3'
miRNA:   3'- -UGGGGA-GaGCu----------UCGCGaCGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 62728 0.66 0.423489
Target:  5'- cACCCUgaUCGgcGCGCUGgCgGUCAGCGc -3'
miRNA:   3'- -UGGGGagAGCuuCGCGAC-G-CGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 53553 0.67 0.362184
Target:  5'- uACCCCgagauggugCUCGgcGCGCacGCGCUgaccGGCAg -3'
miRNA:   3'- -UGGGGa--------GAGCuuCGCGa-CGCGG----UCGU- -5'
23987 5' -60.7 NC_005262.1 + 22469 0.68 0.314757
Target:  5'- cACCCC-CgagaagcgCGAAGCGCUgaagcuggcGCGCgAGCGg -3'
miRNA:   3'- -UGGGGaGa-------GCUUCGCGA---------CGCGgUCGU- -5'
23987 5' -60.7 NC_005262.1 + 30312 0.69 0.307324
Target:  5'- gGCCCagacCGcGAGCGagaUGCGCCAGCAg -3'
miRNA:   3'- -UGGGgagaGC-UUCGCg--ACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 53441 0.73 0.146624
Target:  5'- gUUCCUC-CaGAAGCGCgGCGCCGGCGu -3'
miRNA:   3'- uGGGGAGaG-CUUCGCGaCGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 23497 0.73 0.15059
Target:  5'- cGCCCgCUgaCgccCGAGGaGCUGCGCCAGCAg -3'
miRNA:   3'- -UGGG-GA--Ga--GCUUCgCGACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 26548 0.72 0.167446
Target:  5'- cACUCCgaagCggcCGAcGCGCUGCGCCAGUu -3'
miRNA:   3'- -UGGGGa---Ga--GCUuCGCGACGCGGUCGu -5'
23987 5' -60.7 NC_005262.1 + 39953 0.71 0.211656
Target:  5'- cUCCCUCUCuccuuGCGCU-CGCCGGCGc -3'
miRNA:   3'- uGGGGAGAGcuu--CGCGAcGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 1235 0.69 0.285834
Target:  5'- cACCCgUC-CGAAGUGCUucgGCGCUgAGCGg -3'
miRNA:   3'- -UGGGgAGaGCUUCGCGA---CGCGG-UCGU- -5'
23987 5' -60.7 NC_005262.1 + 25448 0.69 0.292863
Target:  5'- aACCUg-CcCGAGGCGCUGCGCgaGGCGa -3'
miRNA:   3'- -UGGGgaGaGCUUCGCGACGCGg-UCGU- -5'
23987 5' -60.7 NC_005262.1 + 43843 0.69 0.292863
Target:  5'- gGCCgCg--CGcGGCGgUGCGCCGGCAg -3'
miRNA:   3'- -UGGgGagaGCuUCGCgACGCGGUCGU- -5'
23987 5' -60.7 NC_005262.1 + 24184 0.69 0.298583
Target:  5'- uCCCCggcgaguucacgCcCGAGGCggcagccgcgacGCUGCGCCGGCAc -3'
miRNA:   3'- uGGGGa-----------GaGCUUCG------------CGACGCGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.