miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23988 5' -56.2 NC_005262.1 + 50060 0.66 0.756034
Target:  5'- aGCGGgcgCCGCuGUcuCGucGGCGAUCGGc -3'
miRNA:   3'- cUGCCa--GGCG-CGauGUu-CCGCUAGCC- -5'
23988 5' -56.2 NC_005262.1 + 60477 0.66 0.756034
Target:  5'- uGACG--CUGCGCgauCAGGGCGAgacgcCGGg -3'
miRNA:   3'- -CUGCcaGGCGCGau-GUUCCGCUa----GCC- -5'
23988 5' -56.2 NC_005262.1 + 37482 0.66 0.745947
Target:  5'- --aGGUUCGCGC-GCuuauAGGCccacagGAUCGGg -3'
miRNA:   3'- cugCCAGGCGCGaUGu---UCCG------CUAGCC- -5'
23988 5' -56.2 NC_005262.1 + 63686 0.66 0.745947
Target:  5'- cAUGGUCCaCGCcgGCgGGGGCGG-CGGa -3'
miRNA:   3'- cUGCCAGGcGCGa-UG-UUCCGCUaGCC- -5'
23988 5' -56.2 NC_005262.1 + 34937 0.66 0.745947
Target:  5'- uGAgGGUCaUGUGCUcgcgcGCGAGGaaGUCGGg -3'
miRNA:   3'- -CUgCCAG-GCGCGA-----UGUUCCgcUAGCC- -5'
23988 5' -56.2 NC_005262.1 + 30949 0.66 0.745947
Target:  5'- uGACGG--CGCGCUACuucccgcAGGCGggCGa -3'
miRNA:   3'- -CUGCCagGCGCGAUGu------UCCGCuaGCc -5'
23988 5' -56.2 NC_005262.1 + 359 0.66 0.73575
Target:  5'- -cCGGagCCGCGagACGAGGUGA-CGGa -3'
miRNA:   3'- cuGCCa-GGCGCgaUGUUCCGCUaGCC- -5'
23988 5' -56.2 NC_005262.1 + 15500 0.66 0.73575
Target:  5'- cGGCGGcUCGCucaccggcgaGCUGCAcaAGGCGAugugguUCGGc -3'
miRNA:   3'- -CUGCCaGGCG----------CGAUGU--UCCGCU------AGCC- -5'
23988 5' -56.2 NC_005262.1 + 24324 0.66 0.73575
Target:  5'- cGAUGGUCgGCGCgaucgACAugcGGCucugcGUCGGc -3'
miRNA:   3'- -CUGCCAGgCGCGa----UGUu--CCGc----UAGCC- -5'
23988 5' -56.2 NC_005262.1 + 16414 0.66 0.73575
Target:  5'- -cCGGgauUCUGCGCcGCGAGGCGcaaGGa -3'
miRNA:   3'- cuGCC---AGGCGCGaUGUUCCGCuagCC- -5'
23988 5' -56.2 NC_005262.1 + 63381 0.66 0.73575
Target:  5'- aACGGcuuUCCGaCGCaGCAacagAGGCG-UCGGa -3'
miRNA:   3'- cUGCC---AGGC-GCGaUGU----UCCGCuAGCC- -5'
23988 5' -56.2 NC_005262.1 + 55338 0.66 0.73575
Target:  5'- cGACGaGUggaaagCCGCGCUcgacgagacggACAAGaGCGAcCGGa -3'
miRNA:   3'- -CUGC-CA------GGCGCGA-----------UGUUC-CGCUaGCC- -5'
23988 5' -56.2 NC_005262.1 + 28413 0.66 0.73575
Target:  5'- aGCGG-CaCGUGCU-CGAGGuCGaAUCGGg -3'
miRNA:   3'- cUGCCaG-GCGCGAuGUUCC-GC-UAGCC- -5'
23988 5' -56.2 NC_005262.1 + 13223 0.66 0.725454
Target:  5'- cGGCGcGUCCGCcaacGCUccucuCGGGGUGA-CGGa -3'
miRNA:   3'- -CUGC-CAGGCG----CGAu----GUUCCGCUaGCC- -5'
23988 5' -56.2 NC_005262.1 + 31640 0.66 0.725454
Target:  5'- -uCGGUCuUGCGCUGgAugacGGCGuuuUCGGa -3'
miRNA:   3'- cuGCCAG-GCGCGAUgUu---CCGCu--AGCC- -5'
23988 5' -56.2 NC_005262.1 + 30866 0.66 0.725454
Target:  5'- -uCGGcuccuuagCCGCGCgagGCGAGGUaggcaucacGAUCGGc -3'
miRNA:   3'- cuGCCa-------GGCGCGa--UGUUCCG---------CUAGCC- -5'
23988 5' -56.2 NC_005262.1 + 49647 0.66 0.725454
Target:  5'- cGCGaUCgGCGgcCUGCAAGGCGG-CGGc -3'
miRNA:   3'- cUGCcAGgCGC--GAUGUUCCGCUaGCC- -5'
23988 5' -56.2 NC_005262.1 + 55305 0.66 0.71507
Target:  5'- cGCGGcCUGCGCgacgaaGCGAcGGCGGUUGu -3'
miRNA:   3'- cUGCCaGGCGCGa-----UGUU-CCGCUAGCc -5'
23988 5' -56.2 NC_005262.1 + 53431 0.66 0.704608
Target:  5'- --aGGUUCGCGCggucgGCGAGGUag-CGGc -3'
miRNA:   3'- cugCCAGGCGCGa----UGUUCCGcuaGCC- -5'
23988 5' -56.2 NC_005262.1 + 5174 0.66 0.704608
Target:  5'- uGACGGcCgGCGUcGCGGGcGCGGgcgCGGc -3'
miRNA:   3'- -CUGCCaGgCGCGaUGUUC-CGCUa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.