miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23989 3' -52.4 NC_005262.1 + 26892 0.66 0.909703
Target:  5'- uGGGCCggcGCgucCGUUGUCGAUCAuccgcgcgacgaucCCGAGc -3'
miRNA:   3'- -CCUGG---UGa--GCGACAGUUAGU--------------GGCUCu -5'
23989 3' -52.4 NC_005262.1 + 27597 0.66 0.905076
Target:  5'- cGGGCacgaGCUgggUGCUGUCuuuGUCGuuGAGGu -3'
miRNA:   3'- -CCUGg---UGA---GCGACAGu--UAGUggCUCU- -5'
23989 3' -52.4 NC_005262.1 + 43958 0.66 0.905076
Target:  5'- cGGCCAUgCGCg--CGAUCgcGCCGAGGu -3'
miRNA:   3'- cCUGGUGaGCGacaGUUAG--UGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 32065 0.66 0.891124
Target:  5'- gGGGCCAUga--UGUCGGUCGCUGcGAg -3'
miRNA:   3'- -CCUGGUGagcgACAGUUAGUGGCuCU- -5'
23989 3' -52.4 NC_005262.1 + 56777 0.66 0.891124
Target:  5'- cGAgCGCaCGCUGUCG-UCGCCGuuGAg -3'
miRNA:   3'- cCUgGUGaGCGACAGUuAGUGGCu-CU- -5'
23989 3' -52.4 NC_005262.1 + 48440 0.66 0.883748
Target:  5'- cGGCCGCcagcagCGCcggGUCGGUCguGCCGAGc -3'
miRNA:   3'- cCUGGUGa-----GCGa--CAGUUAG--UGGCUCu -5'
23989 3' -52.4 NC_005262.1 + 8224 0.66 0.883748
Target:  5'- cGGGCCAUgaGCUGUCGGcgaagcUCgaaGCCGAGc -3'
miRNA:   3'- -CCUGGUGagCGACAGUU------AG---UGGCUCu -5'
23989 3' -52.4 NC_005262.1 + 56705 0.67 0.860092
Target:  5'- cGugCGCUCGCUGgaggacGUguCCGAGGc -3'
miRNA:   3'- cCugGUGAGCGACagu---UAguGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 28437 0.67 0.859265
Target:  5'- cGGGCCgcgccguGCUCGCcGU--GUCGCCGAuGAu -3'
miRNA:   3'- -CCUGG-------UGAGCGaCAguUAGUGGCU-CU- -5'
23989 3' -52.4 NC_005262.1 + 25820 0.67 0.851717
Target:  5'- cGGAUgGaCUCgGCccacGUCAucAUCACCGAGAa -3'
miRNA:   3'- -CCUGgU-GAG-CGa---CAGU--UAGUGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 52401 0.67 0.834284
Target:  5'- uGGCCGagaCGCUGgaggCGAUCGCgGAGGc -3'
miRNA:   3'- cCUGGUga-GCGACa---GUUAGUGgCUCU- -5'
23989 3' -52.4 NC_005262.1 + 57946 0.67 0.834284
Target:  5'- uGGACacggcguauaGCUUGCcGUCGAUCucuACCGGGGc -3'
miRNA:   3'- -CCUGg---------UGAGCGaCAGUUAG---UGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 56020 0.68 0.79693
Target:  5'- cGGCCGC-CGCccUCGAUCGCCGGa- -3'
miRNA:   3'- cCUGGUGaGCGacAGUUAGUGGCUcu -5'
23989 3' -52.4 NC_005262.1 + 10964 0.68 0.79693
Target:  5'- aGGCauucgCGCUGUCGGcgCGCCGGGAa -3'
miRNA:   3'- cCUGguga-GCGACAGUUa-GUGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 29730 0.69 0.756812
Target:  5'- cGGcauGCCGCUCGCUGcCGAU-GCCGGu- -3'
miRNA:   3'- -CC---UGGUGAGCGACaGUUAgUGGCUcu -5'
23989 3' -52.4 NC_005262.1 + 459 0.7 0.72534
Target:  5'- cGGGCUGCUCGCUGaCAuccUCGCCa--- -3'
miRNA:   3'- -CCUGGUGAGCGACaGUu--AGUGGcucu -5'
23989 3' -52.4 NC_005262.1 + 33828 0.7 0.72534
Target:  5'- aGGAUCACauUCGCUGggaGGUCcCCGAGc -3'
miRNA:   3'- -CCUGGUG--AGCGACag-UUAGuGGCUCu -5'
23989 3' -52.4 NC_005262.1 + 60735 0.71 0.649164
Target:  5'- aGGACCGCUgGCUcggCGAagGCUGGGAg -3'
miRNA:   3'- -CCUGGUGAgCGAca-GUUagUGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 49500 0.72 0.594051
Target:  5'- cGGugCGCgcaGCg--CGAUCGCCGAGGg -3'
miRNA:   3'- -CCugGUGag-CGacaGUUAGUGGCUCU- -5'
23989 3' -52.4 NC_005262.1 + 56190 0.76 0.381294
Target:  5'- cGACgAaaCGCaUGUCGAUCGCCGAGAa -3'
miRNA:   3'- cCUGgUgaGCG-ACAGUUAGUGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.