miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 17978 0.66 0.454443
Target:  5'- aGCgCCGGaagUGCGCacguucUUCGACGUGGCu -3'
miRNA:   3'- cCG-GGCCgg-ACGUG------AAGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 23382 0.66 0.454443
Target:  5'- aGGCCCGcaacgugaagcGCCacaagGCGg--CGAUGCGGCGg -3'
miRNA:   3'- -CCGGGC-----------CGGa----CGUgaaGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 5109 0.66 0.454443
Target:  5'- cGCCCGguucacgauGCCUGcCAUgcgCGACggGCGGCGc -3'
miRNA:   3'- cCGGGC---------CGGAC-GUGaa-GCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 44144 0.66 0.454443
Target:  5'- -uUCCGGCCggacGCGCgcgCGaucgggcaggaGCGCGGCGg -3'
miRNA:   3'- ccGGGCCGGa---CGUGaa-GC-----------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 48560 0.66 0.454443
Target:  5'- cGCCCGuGCCcacGCGgcUCGcgauccGCGCGGCAu -3'
miRNA:   3'- cCGGGC-CGGa--CGUgaAGC------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 55006 0.66 0.454443
Target:  5'- cGCCCGGCagcgucagGUGCgagccgUCGaacugGCGCGGCGc -3'
miRNA:   3'- cCGGGCCGga------CGUGa-----AGC-----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 43320 0.66 0.452567
Target:  5'- cGCCCGaggaggaaGCCgcugaacaggcgGCGa-UCGACGCGGCGa -3'
miRNA:   3'- cCGGGC--------CGGa-----------CGUgaAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 5068 0.66 0.445106
Target:  5'- aGGCCCGcGgCggcgGCGCgugCGAC-CGGCu -3'
miRNA:   3'- -CCGGGC-CgGa---CGUGaa-GCUGcGCCGu -5'
23991 5' -61.6 NC_005262.1 + 60114 0.66 0.445106
Target:  5'- uGGUCgGGCaCgaggGCGCcagCGuCGCGGCGa -3'
miRNA:   3'- -CCGGgCCG-Ga---CGUGaa-GCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 22573 0.66 0.445106
Target:  5'- cGGCCuuagCGGCC-GCAUgcgCGGCGCuGCu -3'
miRNA:   3'- -CCGG----GCCGGaCGUGaa-GCUGCGcCGu -5'
23991 5' -61.6 NC_005262.1 + 32119 0.66 0.445106
Target:  5'- gGGUuuUCGGCCUGCAUcau--CGCGGCc -3'
miRNA:   3'- -CCG--GGCCGGACGUGaagcuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 48599 0.66 0.445106
Target:  5'- cGCCuCGGCCUGCAaucgcagcUCGACGaGGa- -3'
miRNA:   3'- cCGG-GCCGGACGUga------AGCUGCgCCgu -5'
23991 5' -61.6 NC_005262.1 + 17539 0.66 0.445106
Target:  5'- gGGCaCgCGGUC-GCGCg-CGAgGCGGCAg -3'
miRNA:   3'- -CCG-G-GCCGGaCGUGaaGCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 5177 0.66 0.445106
Target:  5'- cGGCCgGcGUCgcggGCGCg--GGCGCGGCc -3'
miRNA:   3'- -CCGGgC-CGGa---CGUGaagCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 43691 0.66 0.445106
Target:  5'- aGCCgGGCCgaauucGCGCggCGACGC-GCu -3'
miRNA:   3'- cCGGgCCGGa-----CGUGaaGCUGCGcCGu -5'
23991 5' -61.6 NC_005262.1 + 35845 0.66 0.445106
Target:  5'- cGGCgCCGcgaccGCCcagauguuugUGCGCggCGACGCGcGCAc -3'
miRNA:   3'- -CCG-GGC-----CGG----------ACGUGaaGCUGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 5347 0.66 0.439556
Target:  5'- aGGCauCCGGCUUcgaggcauucaaucaGCGCggcgUCGACGCcacGGCGa -3'
miRNA:   3'- -CCG--GGCCGGA---------------CGUGa---AGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 43447 0.66 0.439556
Target:  5'- cGGCgaCGcGCUugUGCggaucgagucgagccGCUUCGugGCGGCGa -3'
miRNA:   3'- -CCGg-GC-CGG--ACG---------------UGAAGCugCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 10531 0.66 0.435878
Target:  5'- cGCCCGGCUUGCcgaGCaUCuGcAUGCGGUc -3'
miRNA:   3'- cCGGGCCGGACG---UGaAG-C-UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 15389 0.66 0.435878
Target:  5'- cGCCCGcCCaUGCGCggcgaaUCGACGacuGGCAg -3'
miRNA:   3'- cCGGGCcGG-ACGUGa-----AGCUGCg--CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.