miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 22573 0.66 0.445106
Target:  5'- cGGCCuuagCGGCC-GCAUgcgCGGCGCuGCu -3'
miRNA:   3'- -CCGG----GCCGGaCGUGaa-GCUGCGcCGu -5'
23991 5' -61.6 NC_005262.1 + 15389 0.66 0.435878
Target:  5'- cGCCCGcCCaUGCGCggcgaaUCGACGacuGGCAg -3'
miRNA:   3'- cCGGGCcGG-ACGUGa-----AGCUGCg--CCGU- -5'
23991 5' -61.6 NC_005262.1 + 10531 0.66 0.435878
Target:  5'- cGCCCGGCUUGCcgaGCaUCuGcAUGCGGUc -3'
miRNA:   3'- cCGGGCCGGACG---UGaAG-C-UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 59139 0.66 0.408871
Target:  5'- cGGCCgGGCC-GCG--UCGcCGCGcGCAu -3'
miRNA:   3'- -CCGGgCCGGaCGUgaAGCuGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 21625 0.66 0.417757
Target:  5'- uGCCCGGagUGCGa--CGGCGaCGGCGa -3'
miRNA:   3'- cCGGGCCggACGUgaaGCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 5347 0.66 0.439556
Target:  5'- aGGCauCCGGCUUcgaggcauucaaucaGCGCggcgUCGACGCcacGGCGa -3'
miRNA:   3'- -CCG--GGCCGGA---------------CGUGa---AGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 16568 0.66 0.42676
Target:  5'- cGGCCgCGgauGCCgagcagGCGCgugugcuggUCGAgGCGGCGa -3'
miRNA:   3'- -CCGG-GC---CGGa-----CGUGa--------AGCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 43447 0.66 0.439556
Target:  5'- cGGCgaCGcGCUugUGCggaucgagucgagccGCUUCGugGCGGCGa -3'
miRNA:   3'- -CCGg-GC-CGG--ACG---------------UGAAGCugCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45502 0.67 0.391457
Target:  5'- aGCCCGGCCga-GUUUUG-CGCGGCu -3'
miRNA:   3'- cCGGGCCGGacgUGAAGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 53049 0.67 0.374534
Target:  5'- uGCCCGGCUcgaGCACcUUGcCGcCGGCGa -3'
miRNA:   3'- cCGGGCCGGa--CGUGaAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 57596 0.67 0.382933
Target:  5'- uGCCCGGCgcgacgCUGaACUUCGGCGCcucgucGGCc -3'
miRNA:   3'- cCGGGCCG------GACgUGAAGCUGCG------CCGu -5'
23991 5' -61.6 NC_005262.1 + 58997 0.67 0.358113
Target:  5'- -uCCCGcGCCgucGCGCUUCGAccgucugcaagcCGCGGUg -3'
miRNA:   3'- ccGGGC-CGGa--CGUGAAGCU------------GCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 34466 0.67 0.36626
Target:  5'- uGCCCGgaGCCUacggcguucgaGCACaUCcGCGCGGCGg -3'
miRNA:   3'- cCGGGC--CGGA-----------CGUGaAGcUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 24961 0.67 0.390599
Target:  5'- cGCCCagcuucaggaacaGGCCgGCuuggUCGAgGCGGCAu -3'
miRNA:   3'- cCGGG-------------CCGGaCGuga-AGCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 55637 0.67 0.391457
Target:  5'- aGCCgGGCCgcGCGC-UCGugGCcGCGu -3'
miRNA:   3'- cCGGgCCGGa-CGUGaAGCugCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 45192 0.67 0.400104
Target:  5'- gGGUaaCGGCCUGC-CcUCGcAgGCGGCAu -3'
miRNA:   3'- -CCGg-GCCGGACGuGaAGC-UgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 18715 0.67 0.400104
Target:  5'- cGCCaGGCgucaagGCGCUccucagcuUCGGCGCGGCu -3'
miRNA:   3'- cCGGgCCGga----CGUGA--------AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 45334 0.67 0.358113
Target:  5'- uGCaaGGUCUGCAaggCGGCGCGGgCGu -3'
miRNA:   3'- cCGggCCGGACGUgaaGCUGCGCC-GU- -5'
23991 5' -61.6 NC_005262.1 + 14348 0.67 0.400104
Target:  5'- uGCgaCGuGCUUGCGCgcgUCGACugGCGGCGg -3'
miRNA:   3'- cCGg-GC-CGGACGUGa--AGCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45781 0.67 0.391457
Target:  5'- cGGCugCCGGCCcucgaUGCGCa-CGAagUGCGGCAc -3'
miRNA:   3'- -CCG--GGCCGG-----ACGUGaaGCU--GCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.