Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 25569 | 0.67 | 0.36626 |
Target: 5'- aGCUCGGCCUucGUGCagUUGGCgaGCGGCAu -3' miRNA: 3'- cCGGGCCGGA--CGUGa-AGCUG--CGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 51044 | 0.67 | 0.374534 |
Target: 5'- -aCUCGGCCUGCgucgGCUucagcUCGGCGgcCGGCAc -3' miRNA: 3'- ccGGGCCGGACG----UGA-----AGCUGC--GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 56230 | 0.67 | 0.374534 |
Target: 5'- uGGUUCaGCUUGCugUucgggucgcUCGGCGCGGUc -3' miRNA: 3'- -CCGGGcCGGACGugA---------AGCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 57596 | 0.67 | 0.382933 |
Target: 5'- uGCCCGGCgcgacgCUGaACUUCGGCGCcucgucGGCc -3' miRNA: 3'- cCGGGCCG------GACgUGAAGCUGCG------CCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 45781 | 0.67 | 0.391457 |
Target: 5'- cGGCugCCGGCCcucgaUGCGCa-CGAagUGCGGCAc -3' miRNA: 3'- -CCG--GGCCGG-----ACGUGaaGCU--GCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 42158 | 0.68 | 0.349299 |
Target: 5'- gGGCCCGGUcgcggccgaucguCUGUACgugaUgGGCGaCGGCGc -3' miRNA: 3'- -CCGGGCCG-------------GACGUGa---AgCUGC-GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 48633 | 0.68 | 0.32681 |
Target: 5'- aGCCCGGCCgcuucaagGUGCU--GACGCaGCAg -3' miRNA: 3'- cCGGGCCGGa-------CGUGAagCUGCGcCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 44807 | 0.68 | 0.350094 |
Target: 5'- aGUCgCGGCCgagcUGCAUUUCcucgcGCGCGGCGa -3' miRNA: 3'- cCGG-GCCGG----ACGUGAAGc----UGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 16348 | 0.68 | 0.304693 |
Target: 5'- uGGCUCGGC--GCGCUgaUCGGCGCcgccgcguucGGCAa -3' miRNA: 3'- -CCGGGCCGgaCGUGA--AGCUGCG----------CCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 37818 | 0.68 | 0.342203 |
Target: 5'- uGCCC-GCCgUGUACUgcgCGA-GCGGCAa -3' miRNA: 3'- cCGGGcCGG-ACGUGAa--GCUgCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 32799 | 0.68 | 0.334441 |
Target: 5'- cGCgCCGGCCauCGCgUUCGACGuCGGCc -3' miRNA: 3'- cCG-GGCCGGacGUG-AAGCUGC-GCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 48306 | 0.68 | 0.349299 |
Target: 5'- aGG-CCGGCCUGCGCUacaUCGccuACGgccagaagaagcuCGGCAc -3' miRNA: 3'- -CCgGGCCGGACGUGA---AGC---UGC-------------GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 2748 | 0.68 | 0.350094 |
Target: 5'- aGGuCCCGGa-UGCGCUUCaGCacgGCGGCGg -3' miRNA: 3'- -CC-GGGCCggACGUGAAGcUG---CGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 32730 | 0.68 | 0.350094 |
Target: 5'- cGGCgugcugCCGGCCgacCACUccgugagCGACGCGGUg -3' miRNA: 3'- -CCG------GGCCGGac-GUGAa------GCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 58922 | 0.68 | 0.334441 |
Target: 5'- cGGCCCGaCCgaugGCGCgcgcuucucggUCGGCGCGcaGCAg -3' miRNA: 3'- -CCGGGCcGGa---CGUGa----------AGCUGCGC--CGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 57546 | 0.68 | 0.32681 |
Target: 5'- aGGUcguaCCGGUCacGCGCaucgagacgUUCGACGCGGCu -3' miRNA: 3'- -CCG----GGCCGGa-CGUG---------AAGCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 56280 | 0.68 | 0.334441 |
Target: 5'- gGGCUCGGCgaGCAg-UCGGCgaagaaccGCGGCu -3' miRNA: 3'- -CCGGGCCGgaCGUgaAGCUG--------CGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 5031 | 0.68 | 0.32681 |
Target: 5'- cGGCaguugcucgCCGGCCgGCGCcugaUCGGCG-GGCAg -3' miRNA: 3'- -CCG---------GGCCGGaCGUGa---AGCUGCgCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 11650 | 0.68 | 0.319308 |
Target: 5'- cGGCgCCGGCgucgcgCUGCACgcUGGC-CGGCAg -3' miRNA: 3'- -CCG-GGCCG------GACGUGaaGCUGcGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 40342 | 0.68 | 0.311935 |
Target: 5'- cGGCUcaCGGCCgGCGCgcugaugUCGAuCGuCGGCGa -3' miRNA: 3'- -CCGG--GCCGGaCGUGa------AGCU-GC-GCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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