Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 26810 | 0.72 | 0.190904 |
Target: 5'- cGCCCGGCCuUGCAUcggaaUUCGAgGCcGCGa -3' miRNA: 3'- cCGGGCCGG-ACGUG-----AAGCUgCGcCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 50194 | 0.71 | 0.206007 |
Target: 5'- cGCUCGGCCggcuuCugUUCG-CGCGGCGc -3' miRNA: 3'- cCGGGCCGGac---GugAAGCuGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 22323 | 0.71 | 0.216642 |
Target: 5'- aGG-CCGGCCgGCGUgggCGGCGCGGCc -3' miRNA: 3'- -CCgGGCCGGaCGUGaa-GCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 24784 | 0.71 | 0.195828 |
Target: 5'- aGCCgGGCgaGCACUUCGAcauCGCgaagGGCAa -3' miRNA: 3'- cCGGgCCGgaCGUGAAGCU---GCG----CCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 20579 | 0.71 | 0.200861 |
Target: 5'- aGCCCGGCgaGCAg--CG-CGCGGCGc -3' miRNA: 3'- cCGGGCCGgaCGUgaaGCuGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 57021 | 0.71 | 0.206007 |
Target: 5'- cGGaUCGGCgUGCGCUucUCGAgCGCGGCc -3' miRNA: 3'- -CCgGGCCGgACGUGA--AGCU-GCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 45228 | 0.71 | 0.211267 |
Target: 5'- gGGCUCGGCCUgaacgccgGCAacUCGGCGacCGGCAa -3' miRNA: 3'- -CCGGGCCGGA--------CGUgaAGCUGC--GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 34937 | 0.71 | 0.216642 |
Target: 5'- uGGCCguguucuuCGGCg-GCAagUUCGACGCGGCGc -3' miRNA: 3'- -CCGG--------GCCGgaCGUg-AAGCUGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 49641 | 0.71 | 0.222133 |
Target: 5'- uGGCCucgcgaucggCGGCCUGCAa---GGCGgCGGCAu -3' miRNA: 3'- -CCGG----------GCCGGACGUgaagCUGC-GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 2017 | 0.71 | 0.222133 |
Target: 5'- cGCCaCGGCgCUGCuucguGCUgcUCGACGgGGCGc -3' miRNA: 3'- cCGG-GCCG-GACG-----UGA--AGCUGCgCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 51957 | 0.7 | 0.251388 |
Target: 5'- cGGCUCGGUCgUGCuCgcgUCGuuCGCGGCGc -3' miRNA: 3'- -CCGGGCCGG-ACGuGa--AGCu-GCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 53588 | 0.7 | 0.257607 |
Target: 5'- cGGCCCcugcGGCguCUGCACUUCGGC-CGuGCc -3' miRNA: 3'- -CCGGG----CCG--GACGUGAAGCUGcGC-CGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 16099 | 0.7 | 0.227743 |
Target: 5'- cGGCgCgGGCCUGaaggACUuccUCGGCGCGcGCAc -3' miRNA: 3'- -CCG-GgCCGGACg---UGA---AGCUGCGC-CGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 58990 | 0.7 | 0.257607 |
Target: 5'- gGGCcgCCGGCCUGaucg-CGcaGCGCGGCAg -3' miRNA: 3'- -CCG--GGCCGGACgugaaGC--UGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 49922 | 0.7 | 0.257607 |
Target: 5'- cGGCaCCgGGCCUucgcGCGCUccaUCG-CGCGGCc -3' miRNA: 3'- -CCG-GG-CCGGA----CGUGA---AGCuGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 15855 | 0.7 | 0.239322 |
Target: 5'- cGGCacucgaCGGCCaUGUACcUCGACGCgauGGCGc -3' miRNA: 3'- -CCGg-----GCCGG-ACGUGaAGCUGCG---CCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 6843 | 0.7 | 0.233472 |
Target: 5'- uGCCCGGCCacgaGCACaaCGAgGCGcGCGa -3' miRNA: 3'- cCGGGCCGGa---CGUGaaGCUgCGC-CGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 43837 | 0.7 | 0.239322 |
Target: 5'- cGGgCCGGCCgcGCGCggCGguGCGCcGGCAg -3' miRNA: 3'- -CCgGGCCGGa-CGUGaaGC--UGCG-CCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 46795 | 0.7 | 0.257607 |
Target: 5'- uGCgCCGGCUUGUccACUgCGcGCGCGGCGc -3' miRNA: 3'- cCG-GGCCGGACG--UGAaGC-UGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 11093 | 0.69 | 0.290598 |
Target: 5'- cGGCCC-GCUgGCACgcUUGGCGgGGCAa -3' miRNA: 3'- -CCGGGcCGGaCGUGa-AGCUGCgCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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