miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 15259 1.09 0.000291
Target:  5'- gGGCCCGGCCUGCACUUCGACGCGGCAu -3'
miRNA:   3'- -CCGGGCCGGACGUGAAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 59212 0.84 0.024851
Target:  5'- cGGCCCGGCCgguuCGCcUCGGCGCGGUAg -3'
miRNA:   3'- -CCGGGCCGGac--GUGaAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 33373 0.8 0.047214
Target:  5'- cGCCCGGCgUGCGCg-CGAUGCGGUAc -3'
miRNA:   3'- cCGGGCCGgACGUGaaGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 11494 0.77 0.07962
Target:  5'- cGGCCCGGCgCgGCgcgGCUUCGGCGUGGa- -3'
miRNA:   3'- -CCGGGCCG-GaCG---UGAAGCUGCGCCgu -5'
23991 5' -61.6 NC_005262.1 + 32973 0.76 0.093701
Target:  5'- cGGCuuGGCCg--ACgUUCGACGCGGCGa -3'
miRNA:   3'- -CCGggCCGGacgUG-AAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 27956 0.76 0.098898
Target:  5'- uGGCUCGGCCgccuUGCcgccgucCUUgCGACGCGGCAg -3'
miRNA:   3'- -CCGGGCCGG----ACGu------GAA-GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 43056 0.75 0.113105
Target:  5'- -aCCCGGCCgGCACcgcgCGcCGCGGCAg -3'
miRNA:   3'- ccGGGCCGGaCGUGaa--GCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 52937 0.75 0.113105
Target:  5'- cGGCCUGcgccGCCUGgGCUUCGcCGgCGGCAa -3'
miRNA:   3'- -CCGGGC----CGGACgUGAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 50360 0.75 0.119306
Target:  5'- gGGCUCGGCCggcgcggGCGCgcccUCGuuGCGGCGg -3'
miRNA:   3'- -CCGGGCCGGa------CGUGa---AGCugCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 48630 0.74 0.125822
Target:  5'- cGGCCCGGCucCUGCGCaUCGAgaCGCGauuGCAg -3'
miRNA:   3'- -CCGGGCCG--GACGUGaAGCU--GCGC---CGU- -5'
23991 5' -61.6 NC_005262.1 + 60832 0.74 0.129202
Target:  5'- uGCgCCGGCCUaCGCgaUCGGCGUGGCGa -3'
miRNA:   3'- cCG-GGCCGGAcGUGa-AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 55307 0.73 0.143578
Target:  5'- aGCgCGGCCUGCGCgacgaagCGACGgCGGUu -3'
miRNA:   3'- cCGgGCCGGACGUGaa-----GCUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 14256 0.73 0.143578
Target:  5'- cGGCuuG-CC-GCACUccUCGGCGCGGCGg -3'
miRNA:   3'- -CCGggCcGGaCGUGA--AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 29774 0.73 0.143578
Target:  5'- cGCCCGGCgUaGUGCcggaCGGCGCGGCAc -3'
miRNA:   3'- cCGGGCCGgA-CGUGaa--GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 46541 0.73 0.158574
Target:  5'- cGGCgCGGCauucggguccgGCGCgggCGGCGCGGCGg -3'
miRNA:   3'- -CCGgGCCGga---------CGUGaa-GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 35069 0.73 0.159401
Target:  5'- uGCCCGG-CUGCcuggaGCUUCGACuuGCGGCc -3'
miRNA:   3'- cCGGGCCgGACG-----UGAAGCUG--CGCCGu -5'
23991 5' -61.6 NC_005262.1 + 2647 0.73 0.159401
Target:  5'- cGGCCCauGCCUGCGCggCGccGgGCGGCGu -3'
miRNA:   3'- -CCGGGc-CGGACGUGaaGC--UgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 3725 0.73 0.163596
Target:  5'- aGCUgGGCCUGCGCcuggaugggUUCcGCGCGGCu -3'
miRNA:   3'- cCGGgCCGGACGUG---------AAGcUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 50108 0.72 0.172285
Target:  5'- cGGCUCGGgCUuCACUUCGgugggcgccgGCGCGGCu -3'
miRNA:   3'- -CCGGGCCgGAcGUGAAGC----------UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 37346 0.72 0.190904
Target:  5'- uGGCUCGGCC-GUugUUCG-UGCGGUu -3'
miRNA:   3'- -CCGGGCCGGaCGugAAGCuGCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.