miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 37346 0.72 0.190904
Target:  5'- uGGCUCGGCC-GUugUUCG-UGCGGUu -3'
miRNA:   3'- -CCGGGCCGGaCGugAAGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 24784 0.71 0.195828
Target:  5'- aGCCgGGCgaGCACUUCGAcauCGCgaagGGCAa -3'
miRNA:   3'- cCGGgCCGgaCGUGAAGCU---GCG----CCGU- -5'
23991 5' -61.6 NC_005262.1 + 20579 0.71 0.200861
Target:  5'- aGCCCGGCgaGCAg--CG-CGCGGCGc -3'
miRNA:   3'- cCGGGCCGgaCGUgaaGCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 57021 0.71 0.206007
Target:  5'- cGGaUCGGCgUGCGCUucUCGAgCGCGGCc -3'
miRNA:   3'- -CCgGGCCGgACGUGA--AGCU-GCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 50194 0.71 0.206007
Target:  5'- cGCUCGGCCggcuuCugUUCG-CGCGGCGc -3'
miRNA:   3'- cCGGGCCGGac---GugAAGCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45228 0.71 0.211267
Target:  5'- gGGCUCGGCCUgaacgccgGCAacUCGGCGacCGGCAa -3'
miRNA:   3'- -CCGGGCCGGA--------CGUgaAGCUGC--GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 34937 0.71 0.216642
Target:  5'- uGGCCguguucuuCGGCg-GCAagUUCGACGCGGCGc -3'
miRNA:   3'- -CCGG--------GCCGgaCGUg-AAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 22323 0.71 0.216642
Target:  5'- aGG-CCGGCCgGCGUgggCGGCGCGGCc -3'
miRNA:   3'- -CCgGGCCGGaCGUGaa-GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 2017 0.71 0.222133
Target:  5'- cGCCaCGGCgCUGCuucguGCUgcUCGACGgGGCGc -3'
miRNA:   3'- cCGG-GCCG-GACG-----UGA--AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 49641 0.71 0.222133
Target:  5'- uGGCCucgcgaucggCGGCCUGCAa---GGCGgCGGCAu -3'
miRNA:   3'- -CCGG----------GCCGGACGUgaagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 16099 0.7 0.227743
Target:  5'- cGGCgCgGGCCUGaaggACUuccUCGGCGCGcGCAc -3'
miRNA:   3'- -CCG-GgCCGGACg---UGA---AGCUGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 6843 0.7 0.233472
Target:  5'- uGCCCGGCCacgaGCACaaCGAgGCGcGCGa -3'
miRNA:   3'- cCGGGCCGGa---CGUGaaGCUgCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 43837 0.7 0.239322
Target:  5'- cGGgCCGGCCgcGCGCggCGguGCGCcGGCAg -3'
miRNA:   3'- -CCgGGCCGGa-CGUGaaGC--UGCG-CCGU- -5'
23991 5' -61.6 NC_005262.1 + 15855 0.7 0.239322
Target:  5'- cGGCacucgaCGGCCaUGUACcUCGACGCgauGGCGc -3'
miRNA:   3'- -CCGg-----GCCGG-ACGUGaAGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 51957 0.7 0.251388
Target:  5'- cGGCUCGGUCgUGCuCgcgUCGuuCGCGGCGc -3'
miRNA:   3'- -CCGGGCCGG-ACGuGa--AGCu-GCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 46795 0.7 0.257607
Target:  5'- uGCgCCGGCUUGUccACUgCGcGCGCGGCGc -3'
miRNA:   3'- cCG-GGCCGGACG--UGAaGC-UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 58990 0.7 0.257607
Target:  5'- gGGCcgCCGGCCUGaucg-CGcaGCGCGGCAg -3'
miRNA:   3'- -CCG--GGCCGGACgugaaGC--UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53588 0.7 0.257607
Target:  5'- cGGCCCcugcGGCguCUGCACUUCGGC-CGuGCc -3'
miRNA:   3'- -CCGGG----CCG--GACGUGAAGCUGcGC-CGu -5'
23991 5' -61.6 NC_005262.1 + 49922 0.7 0.257607
Target:  5'- cGGCaCCgGGCCUucgcGCGCUccaUCG-CGCGGCc -3'
miRNA:   3'- -CCG-GG-CCGGA----CGUGA---AGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 12906 0.69 0.263311
Target:  5'- -cCCCGGCCUGCuggACgaCGacaaccuGCGCGGCGc -3'
miRNA:   3'- ccGGGCCGGACG---UGaaGC-------UGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.