Results 41 - 60 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 17072 | 0.69 | 0.263951 |
Target: 5'- cGGCgCCGauagGCGCgcccgUCGACGCGGCGg -3' miRNA: 3'- -CCG-GGCcggaCGUGa----AGCUGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 51461 | 0.69 | 0.263951 |
Target: 5'- cGGCCuUGGCCgGCgucGCggaCGGCGCGGUg -3' miRNA: 3'- -CCGG-GCCGGaCG---UGaa-GCUGCGCCGu -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 59257 | 0.69 | 0.263951 |
Target: 5'- gGGCCCGuGagCUGCuuCUUCGcguccuccaugcGCGCGGCGa -3' miRNA: 3'- -CCGGGC-Cg-GACGu-GAAGC------------UGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 23423 | 0.69 | 0.270421 |
Target: 5'- cGGCCgUGGUCgaGCGCgugcUCGuGCGCGGCGc -3' miRNA: 3'- -CCGG-GCCGGa-CGUGa---AGC-UGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 53786 | 0.69 | 0.270421 |
Target: 5'- cGGCgauaCCGGCaaccugaUGCAggUCGACaGCGGCAc -3' miRNA: 3'- -CCG----GGCCGg------ACGUgaAGCUG-CGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 41413 | 0.69 | 0.273045 |
Target: 5'- cGGCgCCGGCaccucguaUGCGCcgacuaacacgggCGGCGCGGCu -3' miRNA: 3'- -CCG-GGCCGg-------ACGUGaa-----------GCUGCGCCGu -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 25825 | 0.69 | 0.277019 |
Target: 5'- cGGCuugCCGGCCUGCGCgaUCGcCuCGGCc -3' miRNA: 3'- -CCG---GGCCGGACGUGa-AGCuGcGCCGu -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 53700 | 0.69 | 0.277019 |
Target: 5'- cGCCCGGCUcgggaacgaccgUGUAC-UCGuuuGCGCGGUAc -3' miRNA: 3'- cCGGGCCGG------------ACGUGaAGC---UGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 53798 | 0.69 | 0.277019 |
Target: 5'- cGCCaCGGCCU-----UCGACGCGGCc -3' miRNA: 3'- cCGG-GCCGGAcgugaAGCUGCGCCGu -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 61260 | 0.69 | 0.277019 |
Target: 5'- cGGCCUGGgCCaGUucgugacagACUcgaUCGGCGCGGCc -3' miRNA: 3'- -CCGGGCC-GGaCG---------UGA---AGCUGCGCCGu -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 6081 | 0.69 | 0.279694 |
Target: 5'- aGGCCgCGGCCUucuucucggugauccGCACguugCGGaacgGCGGCAc -3' miRNA: 3'- -CCGG-GCCGGA---------------CGUGaa--GCUg---CGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 55503 | 0.69 | 0.283744 |
Target: 5'- cGCCUccaGCCgGCGCUcgagcugcUCGAUGCGGCGc -3' miRNA: 3'- cCGGGc--CGGaCGUGA--------AGCUGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 53141 | 0.69 | 0.290598 |
Target: 5'- --gCCGcGCgaGUuCUUCGACGCGGCGa -3' miRNA: 3'- ccgGGC-CGgaCGuGAAGCUGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 50436 | 0.69 | 0.290598 |
Target: 5'- cGCUcgCGGUCgucgcggGCGCUUCGuccuGCGCGGCGg -3' miRNA: 3'- cCGG--GCCGGa------CGUGAAGC----UGCGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 11093 | 0.69 | 0.290598 |
Target: 5'- cGGCCC-GCUgGCACgcUUGGCGgGGCAa -3' miRNA: 3'- -CCGGGcCGGaCGUGa-AGCUGCgCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 30232 | 0.69 | 0.297581 |
Target: 5'- cGGCaUCcGCCgGCGCUUCGGCgaccagcaGCGGCAc -3' miRNA: 3'- -CCG-GGcCGGaCGUGAAGCUG--------CGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 6455 | 0.69 | 0.297581 |
Target: 5'- cGGCuCCGGCgaGaCGCcggcaUCGACGCGGg- -3' miRNA: 3'- -CCG-GGCCGgaC-GUGa----AGCUGCGCCgu -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 60162 | 0.69 | 0.297581 |
Target: 5'- -aCCCGGCCgccgugaagGCGC-UCGGCcaguggGCGGCAa -3' miRNA: 3'- ccGGGCCGGa--------CGUGaAGCUG------CGCCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 16348 | 0.68 | 0.304693 |
Target: 5'- uGGCUCGGC--GCGCUgaUCGGCGCcgccgcguucGGCAa -3' miRNA: 3'- -CCGGGCCGgaCGUGA--AGCUGCG----------CCGU- -5' |
|||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 6155 | 0.68 | 0.304693 |
Target: 5'- aGGCCgCGGCCUGaCGCaaccccgUGGUGCGGUAu -3' miRNA: 3'- -CCGG-GCCGGAC-GUGaa-----GCUGCGCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home