Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 15389 | 0.66 | 0.435878 |
Target: 5'- cGCCCGcCCaUGCGCggcgaaUCGACGacuGGCAg -3' miRNA: 3'- cCGGGCcGG-ACGUGa-----AGCUGCg--CCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 16568 | 0.66 | 0.42676 |
Target: 5'- cGGCCgCGgauGCCgagcagGCGCgugugcuggUCGAgGCGGCGa -3' miRNA: 3'- -CCGG-GC---CGGa-----CGUGa--------AGCUgCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 61169 | 0.66 | 0.42676 |
Target: 5'- aGGUuaUCGGgCUGCGcCUUCGuCGaCGGCGu -3' miRNA: 3'- -CCG--GGCCgGACGU-GAAGCuGC-GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 13142 | 0.66 | 0.42676 |
Target: 5'- aGGUCC-GCC-GCGCgcgCuGCGCGGCAc -3' miRNA: 3'- -CCGGGcCGGaCGUGaa-GcUGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 21625 | 0.66 | 0.417757 |
Target: 5'- uGCCCGGagUGCGa--CGGCGaCGGCGa -3' miRNA: 3'- cCGGGCCggACGUgaaGCUGC-GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 60167 | 0.66 | 0.417757 |
Target: 5'- uGCCC-GUCaGCGCgUCGcGCGCGGCGu -3' miRNA: 3'- cCGGGcCGGaCGUGaAGC-UGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 29816 | 0.66 | 0.408871 |
Target: 5'- aGCgCCGG-CUGCGCUUCGgAUGCuGCu -3' miRNA: 3'- cCG-GGCCgGACGUGAAGC-UGCGcCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 59139 | 0.66 | 0.408871 |
Target: 5'- cGGCCgGGCC-GCG--UCGcCGCGcGCAu -3' miRNA: 3'- -CCGGgCCGGaCGUgaAGCuGCGC-CGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 14348 | 0.67 | 0.400104 |
Target: 5'- uGCgaCGuGCUUGCGCgcgUCGACugGCGGCGg -3' miRNA: 3'- cCGg-GC-CGGACGUGa--AGCUG--CGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 18715 | 0.67 | 0.400104 |
Target: 5'- cGCCaGGCgucaagGCGCUccucagcuUCGGCGCGGCu -3' miRNA: 3'- cCGGgCCGga----CGUGA--------AGCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 45192 | 0.67 | 0.400104 |
Target: 5'- gGGUaaCGGCCUGC-CcUCGcAgGCGGCAu -3' miRNA: 3'- -CCGg-GCCGGACGuGaAGC-UgCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 45781 | 0.67 | 0.391457 |
Target: 5'- cGGCugCCGGCCcucgaUGCGCa-CGAagUGCGGCAc -3' miRNA: 3'- -CCG--GGCCGG-----ACGUGaaGCU--GCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 55637 | 0.67 | 0.391457 |
Target: 5'- aGCCgGGCCgcGCGC-UCGugGCcGCGu -3' miRNA: 3'- cCGGgCCGGa-CGUGaAGCugCGcCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 45502 | 0.67 | 0.391457 |
Target: 5'- aGCCCGGCCga-GUUUUG-CGCGGCu -3' miRNA: 3'- cCGGGCCGGacgUGAAGCuGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 24961 | 0.67 | 0.390599 |
Target: 5'- cGCCCagcuucaggaacaGGCCgGCuuggUCGAgGCGGCAu -3' miRNA: 3'- cCGGG-------------CCGGaCGuga-AGCUgCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 57596 | 0.67 | 0.382933 |
Target: 5'- uGCCCGGCgcgacgCUGaACUUCGGCGCcucgucGGCc -3' miRNA: 3'- cCGGGCCG------GACgUGAAGCUGCG------CCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 53049 | 0.67 | 0.374534 |
Target: 5'- uGCCCGGCUcgaGCACcUUGcCGcCGGCGa -3' miRNA: 3'- cCGGGCCGGa--CGUGaAGCuGC-GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 56230 | 0.67 | 0.374534 |
Target: 5'- uGGUUCaGCUUGCugUucgggucgcUCGGCGCGGUc -3' miRNA: 3'- -CCGGGcCGGACGugA---------AGCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 51044 | 0.67 | 0.374534 |
Target: 5'- -aCUCGGCCUGCgucgGCUucagcUCGGCGgcCGGCAc -3' miRNA: 3'- ccGGGCCGGACG----UGA-----AGCUGC--GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 34466 | 0.67 | 0.36626 |
Target: 5'- uGCCCGgaGCCUacggcguucgaGCACaUCcGCGCGGCGg -3' miRNA: 3'- cCGGGC--CGGA-----------CGUGaAGcUGCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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