miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 25569 0.67 0.36626
Target:  5'- aGCUCGGCCUucGUGCagUUGGCgaGCGGCAu -3'
miRNA:   3'- cCGGGCCGGA--CGUGa-AGCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 31643 0.67 0.358113
Target:  5'- aGCUCGGuCUUGCGCUg-GAUGaCGGCGu -3'
miRNA:   3'- cCGGGCC-GGACGUGAagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45334 0.67 0.358113
Target:  5'- uGCaaGGUCUGCAaggCGGCGCGGgCGu -3'
miRNA:   3'- cCGggCCGGACGUgaaGCUGCGCC-GU- -5'
23991 5' -61.6 NC_005262.1 + 58997 0.67 0.358113
Target:  5'- -uCCCGcGCCgucGCGCUUCGAccgucugcaagcCGCGGUg -3'
miRNA:   3'- ccGGGC-CGGa--CGUGAAGCU------------GCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 44862 0.67 0.358113
Target:  5'- aGCUCGGCCUGCcg--CG-CGCuGGCGa -3'
miRNA:   3'- cCGGGCCGGACGugaaGCuGCG-CCGU- -5'
23991 5' -61.6 NC_005262.1 + 44807 0.68 0.350094
Target:  5'- aGUCgCGGCCgagcUGCAUUUCcucgcGCGCGGCGa -3'
miRNA:   3'- cCGG-GCCGG----ACGUGAAGc----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 2748 0.68 0.350094
Target:  5'- aGGuCCCGGa-UGCGCUUCaGCacgGCGGCGg -3'
miRNA:   3'- -CC-GGGCCggACGUGAAGcUG---CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 32730 0.68 0.350094
Target:  5'- cGGCgugcugCCGGCCgacCACUccgugagCGACGCGGUg -3'
miRNA:   3'- -CCG------GGCCGGac-GUGAa------GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 48306 0.68 0.349299
Target:  5'- aGG-CCGGCCUGCGCUacaUCGccuACGgccagaagaagcuCGGCAc -3'
miRNA:   3'- -CCgGGCCGGACGUGA---AGC---UGC-------------GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 42158 0.68 0.349299
Target:  5'- gGGCCCGGUcgcggccgaucguCUGUACgugaUgGGCGaCGGCGc -3'
miRNA:   3'- -CCGGGCCG-------------GACGUGa---AgCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 37818 0.68 0.342203
Target:  5'- uGCCC-GCCgUGUACUgcgCGA-GCGGCAa -3'
miRNA:   3'- cCGGGcCGG-ACGUGAa--GCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 32799 0.68 0.334441
Target:  5'- cGCgCCGGCCauCGCgUUCGACGuCGGCc -3'
miRNA:   3'- cCG-GGCCGGacGUG-AAGCUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 56280 0.68 0.334441
Target:  5'- gGGCUCGGCgaGCAg-UCGGCgaagaaccGCGGCu -3'
miRNA:   3'- -CCGGGCCGgaCGUgaAGCUG--------CGCCGu -5'
23991 5' -61.6 NC_005262.1 + 58922 0.68 0.334441
Target:  5'- cGGCCCGaCCgaugGCGCgcgcuucucggUCGGCGCGcaGCAg -3'
miRNA:   3'- -CCGGGCcGGa---CGUGa----------AGCUGCGC--CGU- -5'
23991 5' -61.6 NC_005262.1 + 60596 0.68 0.334441
Target:  5'- cGCUcuuggCGGCCUGCGCcgcgCGGCcCGGCGu -3'
miRNA:   3'- cCGG-----GCCGGACGUGaa--GCUGcGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 40549 0.68 0.334441
Target:  5'- aGCCCGGCCcaUGCACggccggGAUGuCGGUg -3'
miRNA:   3'- cCGGGCCGG--ACGUGaag---CUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 48633 0.68 0.32681
Target:  5'- aGCCCGGCCgcuucaagGUGCU--GACGCaGCAg -3'
miRNA:   3'- cCGGGCCGGa-------CGUGAagCUGCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 57546 0.68 0.32681
Target:  5'- aGGUcguaCCGGUCacGCGCaucgagacgUUCGACGCGGCu -3'
miRNA:   3'- -CCG----GGCCGGa-CGUG---------AAGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 5031 0.68 0.32681
Target:  5'- cGGCaguugcucgCCGGCCgGCGCcugaUCGGCG-GGCAg -3'
miRNA:   3'- -CCG---------GGCCGGaCGUGa---AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 11650 0.68 0.319308
Target:  5'- cGGCgCCGGCgucgcgCUGCACgcUGGC-CGGCAg -3'
miRNA:   3'- -CCG-GGCCG------GACGUGaaGCUGcGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.