Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23991 | 5' | -61.6 | NC_005262.1 | + | 5274 | 0.68 | 0.319308 |
Target: 5'- cGCgCCGGCCgcgcccGCGCccgCGACGcCGGCc -3' miRNA: 3'- cCG-GGCCGGa-----CGUGaa-GCUGC-GCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 11650 | 0.68 | 0.319308 |
Target: 5'- cGGCgCCGGCgucgcgCUGCACgcUGGC-CGGCAg -3' miRNA: 3'- -CCG-GGCCG------GACGUGaaGCUGcGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 195 | 0.68 | 0.318564 |
Target: 5'- cGGUcgCCGGCCggugacaUGCGCagaagcgugCGGCGCGGCc -3' miRNA: 3'- -CCG--GGCCGG-------ACGUGaa-------GCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 18083 | 0.68 | 0.314869 |
Target: 5'- gGGCCCGGCagccacgucgaagaaCgugcGCACUUcCGGCGCuGCGu -3' miRNA: 3'- -CCGGGCCG---------------Ga---CGUGAA-GCUGCGcCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 40342 | 0.68 | 0.311935 |
Target: 5'- cGGCUcaCGGCCgGCGCgcugaugUCGAuCGuCGGCGa -3' miRNA: 3'- -CCGG--GCCGGaCGUGa------AGCU-GC-GCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 6155 | 0.68 | 0.304693 |
Target: 5'- aGGCCgCGGCCUGaCGCaaccccgUGGUGCGGUAu -3' miRNA: 3'- -CCGG-GCCGGAC-GUGaa-----GCUGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 16348 | 0.68 | 0.304693 |
Target: 5'- uGGCUCGGC--GCGCUgaUCGGCGCcgccgcguucGGCAa -3' miRNA: 3'- -CCGGGCCGgaCGUGA--AGCUGCG----------CCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 60162 | 0.69 | 0.297581 |
Target: 5'- -aCCCGGCCgccgugaagGCGC-UCGGCcaguggGCGGCAa -3' miRNA: 3'- ccGGGCCGGa--------CGUGaAGCUG------CGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 6455 | 0.69 | 0.297581 |
Target: 5'- cGGCuCCGGCgaGaCGCcggcaUCGACGCGGg- -3' miRNA: 3'- -CCG-GGCCGgaC-GUGa----AGCUGCGCCgu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 30232 | 0.69 | 0.297581 |
Target: 5'- cGGCaUCcGCCgGCGCUUCGGCgaccagcaGCGGCAc -3' miRNA: 3'- -CCG-GGcCGGaCGUGAAGCUG--------CGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 11093 | 0.69 | 0.290598 |
Target: 5'- cGGCCC-GCUgGCACgcUUGGCGgGGCAa -3' miRNA: 3'- -CCGGGcCGGaCGUGa-AGCUGCgCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 53141 | 0.69 | 0.290598 |
Target: 5'- --gCCGcGCgaGUuCUUCGACGCGGCGa -3' miRNA: 3'- ccgGGC-CGgaCGuGAAGCUGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 50436 | 0.69 | 0.290598 |
Target: 5'- cGCUcgCGGUCgucgcggGCGCUUCGuccuGCGCGGCGg -3' miRNA: 3'- cCGG--GCCGGa------CGUGAAGC----UGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 55503 | 0.69 | 0.283744 |
Target: 5'- cGCCUccaGCCgGCGCUcgagcugcUCGAUGCGGCGc -3' miRNA: 3'- cCGGGc--CGGaCGUGA--------AGCUGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 6081 | 0.69 | 0.279694 |
Target: 5'- aGGCCgCGGCCUucuucucggugauccGCACguugCGGaacgGCGGCAc -3' miRNA: 3'- -CCGG-GCCGGA---------------CGUGaa--GCUg---CGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 25825 | 0.69 | 0.277019 |
Target: 5'- cGGCuugCCGGCCUGCGCgaUCGcCuCGGCc -3' miRNA: 3'- -CCG---GGCCGGACGUGa-AGCuGcGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 53798 | 0.69 | 0.277019 |
Target: 5'- cGCCaCGGCCU-----UCGACGCGGCc -3' miRNA: 3'- cCGG-GCCGGAcgugaAGCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 53700 | 0.69 | 0.277019 |
Target: 5'- cGCCCGGCUcgggaacgaccgUGUAC-UCGuuuGCGCGGUAc -3' miRNA: 3'- cCGGGCCGG------------ACGUGaAGC---UGCGCCGU- -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 61260 | 0.69 | 0.277019 |
Target: 5'- cGGCCUGGgCCaGUucgugacagACUcgaUCGGCGCGGCc -3' miRNA: 3'- -CCGGGCC-GGaCG---------UGA---AGCUGCGCCGu -5' |
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23991 | 5' | -61.6 | NC_005262.1 | + | 41413 | 0.69 | 0.273045 |
Target: 5'- cGGCgCCGGCaccucguaUGCGCcgacuaacacgggCGGCGCGGCu -3' miRNA: 3'- -CCG-GGCCGg-------ACGUGaa-----------GCUGCGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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