miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 195 0.68 0.318564
Target:  5'- cGGUcgCCGGCCggugacaUGCGCagaagcgugCGGCGCGGCc -3'
miRNA:   3'- -CCG--GGCCGG-------ACGUGaa-------GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 2017 0.71 0.222133
Target:  5'- cGCCaCGGCgCUGCuucguGCUgcUCGACGgGGCGc -3'
miRNA:   3'- cCGG-GCCG-GACG-----UGA--AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 2647 0.73 0.159401
Target:  5'- cGGCCCauGCCUGCGCggCGccGgGCGGCGu -3'
miRNA:   3'- -CCGGGc-CGGACGUGaaGC--UgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 2748 0.68 0.350094
Target:  5'- aGGuCCCGGa-UGCGCUUCaGCacgGCGGCGg -3'
miRNA:   3'- -CC-GGGCCggACGUGAAGcUG---CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 3725 0.73 0.163596
Target:  5'- aGCUgGGCCUGCGCcuggaugggUUCcGCGCGGCu -3'
miRNA:   3'- cCGGgCCGGACGUG---------AAGcUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 5031 0.68 0.32681
Target:  5'- cGGCaguugcucgCCGGCCgGCGCcugaUCGGCG-GGCAg -3'
miRNA:   3'- -CCG---------GGCCGGaCGUGa---AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 5068 0.66 0.445106
Target:  5'- aGGCCCGcGgCggcgGCGCgugCGAC-CGGCu -3'
miRNA:   3'- -CCGGGC-CgGa---CGUGaa-GCUGcGCCGu -5'
23991 5' -61.6 NC_005262.1 + 5109 0.66 0.454443
Target:  5'- cGCCCGguucacgauGCCUGcCAUgcgCGACggGCGGCGc -3'
miRNA:   3'- cCGGGC---------CGGAC-GUGaa-GCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 5177 0.66 0.445106
Target:  5'- cGGCCgGcGUCgcggGCGCg--GGCGCGGCc -3'
miRNA:   3'- -CCGGgC-CGGa---CGUGaagCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 5274 0.68 0.319308
Target:  5'- cGCgCCGGCCgcgcccGCGCccgCGACGcCGGCc -3'
miRNA:   3'- cCG-GGCCGGa-----CGUGaa-GCUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 5347 0.66 0.439556
Target:  5'- aGGCauCCGGCUUcgaggcauucaaucaGCGCggcgUCGACGCcacGGCGa -3'
miRNA:   3'- -CCG--GGCCGGA---------------CGUGa---AGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 6081 0.69 0.279694
Target:  5'- aGGCCgCGGCCUucuucucggugauccGCACguugCGGaacgGCGGCAc -3'
miRNA:   3'- -CCGG-GCCGGA---------------CGUGaa--GCUg---CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 6155 0.68 0.304693
Target:  5'- aGGCCgCGGCCUGaCGCaaccccgUGGUGCGGUAu -3'
miRNA:   3'- -CCGG-GCCGGAC-GUGaa-----GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 6455 0.69 0.297581
Target:  5'- cGGCuCCGGCgaGaCGCcggcaUCGACGCGGg- -3'
miRNA:   3'- -CCG-GGCCGgaC-GUGa----AGCUGCGCCgu -5'
23991 5' -61.6 NC_005262.1 + 6843 0.7 0.233472
Target:  5'- uGCCCGGCCacgaGCACaaCGAgGCGcGCGa -3'
miRNA:   3'- cCGGGCCGGa---CGUGaaGCUgCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 10531 0.66 0.435878
Target:  5'- cGCCCGGCUUGCcgaGCaUCuGcAUGCGGUc -3'
miRNA:   3'- cCGGGCCGGACG---UGaAG-C-UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 11093 0.69 0.290598
Target:  5'- cGGCCC-GCUgGCACgcUUGGCGgGGCAa -3'
miRNA:   3'- -CCGGGcCGGaCGUGa-AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 11494 0.77 0.07962
Target:  5'- cGGCCCGGCgCgGCgcgGCUUCGGCGUGGa- -3'
miRNA:   3'- -CCGGGCCG-GaCG---UGAAGCUGCGCCgu -5'
23991 5' -61.6 NC_005262.1 + 11650 0.68 0.319308
Target:  5'- cGGCgCCGGCgucgcgCUGCACgcUGGC-CGGCAg -3'
miRNA:   3'- -CCG-GGCCG------GACGUGaaGCUGcGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 12906 0.69 0.263311
Target:  5'- -cCCCGGCCUGCuggACgaCGacaaccuGCGCGGCGc -3'
miRNA:   3'- ccGGGCCGGACG---UGaaGC-------UGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.