miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 13142 0.66 0.42676
Target:  5'- aGGUCC-GCC-GCGCgcgCuGCGCGGCAc -3'
miRNA:   3'- -CCGGGcCGGaCGUGaa-GcUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 14256 0.73 0.143578
Target:  5'- cGGCuuG-CC-GCACUccUCGGCGCGGCGg -3'
miRNA:   3'- -CCGggCcGGaCGUGA--AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 14348 0.67 0.400104
Target:  5'- uGCgaCGuGCUUGCGCgcgUCGACugGCGGCGg -3'
miRNA:   3'- cCGg-GC-CGGACGUGa--AGCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 15259 1.09 0.000291
Target:  5'- gGGCCCGGCCUGCACUUCGACGCGGCAu -3'
miRNA:   3'- -CCGGGCCGGACGUGAAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 15389 0.66 0.435878
Target:  5'- cGCCCGcCCaUGCGCggcgaaUCGACGacuGGCAg -3'
miRNA:   3'- cCGGGCcGG-ACGUGa-----AGCUGCg--CCGU- -5'
23991 5' -61.6 NC_005262.1 + 15855 0.7 0.239322
Target:  5'- cGGCacucgaCGGCCaUGUACcUCGACGCgauGGCGc -3'
miRNA:   3'- -CCGg-----GCCGG-ACGUGaAGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 16099 0.7 0.227743
Target:  5'- cGGCgCgGGCCUGaaggACUuccUCGGCGCGcGCAc -3'
miRNA:   3'- -CCG-GgCCGGACg---UGA---AGCUGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 16348 0.68 0.304693
Target:  5'- uGGCUCGGC--GCGCUgaUCGGCGCcgccgcguucGGCAa -3'
miRNA:   3'- -CCGGGCCGgaCGUGA--AGCUGCG----------CCGU- -5'
23991 5' -61.6 NC_005262.1 + 16568 0.66 0.42676
Target:  5'- cGGCCgCGgauGCCgagcagGCGCgugugcuggUCGAgGCGGCGa -3'
miRNA:   3'- -CCGG-GC---CGGa-----CGUGa--------AGCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 17072 0.69 0.263951
Target:  5'- cGGCgCCGauagGCGCgcccgUCGACGCGGCGg -3'
miRNA:   3'- -CCG-GGCcggaCGUGa----AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 17539 0.66 0.445106
Target:  5'- gGGCaCgCGGUC-GCGCg-CGAgGCGGCAg -3'
miRNA:   3'- -CCG-G-GCCGGaCGUGaaGCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 17978 0.66 0.454443
Target:  5'- aGCgCCGGaagUGCGCacguucUUCGACGUGGCu -3'
miRNA:   3'- cCG-GGCCgg-ACGUG------AAGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 18083 0.68 0.314869
Target:  5'- gGGCCCGGCagccacgucgaagaaCgugcGCACUUcCGGCGCuGCGu -3'
miRNA:   3'- -CCGGGCCG---------------Ga---CGUGAA-GCUGCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 18715 0.67 0.400104
Target:  5'- cGCCaGGCgucaagGCGCUccucagcuUCGGCGCGGCu -3'
miRNA:   3'- cCGGgCCGga----CGUGA--------AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 20579 0.71 0.200861
Target:  5'- aGCCCGGCgaGCAg--CG-CGCGGCGc -3'
miRNA:   3'- cCGGGCCGgaCGUgaaGCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 21625 0.66 0.417757
Target:  5'- uGCCCGGagUGCGa--CGGCGaCGGCGa -3'
miRNA:   3'- cCGGGCCggACGUgaaGCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 22323 0.71 0.216642
Target:  5'- aGG-CCGGCCgGCGUgggCGGCGCGGCc -3'
miRNA:   3'- -CCgGGCCGGaCGUGaa-GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 22573 0.66 0.445106
Target:  5'- cGGCCuuagCGGCC-GCAUgcgCGGCGCuGCu -3'
miRNA:   3'- -CCGG----GCCGGaCGUGaa-GCUGCGcCGu -5'
23991 5' -61.6 NC_005262.1 + 23382 0.66 0.454443
Target:  5'- aGGCCCGcaacgugaagcGCCacaagGCGg--CGAUGCGGCGg -3'
miRNA:   3'- -CCGGGC-----------CGGa----CGUgaaGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 23423 0.69 0.270421
Target:  5'- cGGCCgUGGUCgaGCGCgugcUCGuGCGCGGCGc -3'
miRNA:   3'- -CCGG-GCCGGa-CGUGa---AGC-UGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.