miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 24784 0.71 0.195828
Target:  5'- aGCCgGGCgaGCACUUCGAcauCGCgaagGGCAa -3'
miRNA:   3'- cCGGgCCGgaCGUGAAGCU---GCG----CCGU- -5'
23991 5' -61.6 NC_005262.1 + 24961 0.67 0.390599
Target:  5'- cGCCCagcuucaggaacaGGCCgGCuuggUCGAgGCGGCAu -3'
miRNA:   3'- cCGGG-------------CCGGaCGuga-AGCUgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 25569 0.67 0.36626
Target:  5'- aGCUCGGCCUucGUGCagUUGGCgaGCGGCAu -3'
miRNA:   3'- cCGGGCCGGA--CGUGa-AGCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 25825 0.69 0.277019
Target:  5'- cGGCuugCCGGCCUGCGCgaUCGcCuCGGCc -3'
miRNA:   3'- -CCG---GGCCGGACGUGa-AGCuGcGCCGu -5'
23991 5' -61.6 NC_005262.1 + 26810 0.72 0.190904
Target:  5'- cGCCCGGCCuUGCAUcggaaUUCGAgGCcGCGa -3'
miRNA:   3'- cCGGGCCGG-ACGUG-----AAGCUgCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 27956 0.76 0.098898
Target:  5'- uGGCUCGGCCgccuUGCcgccgucCUUgCGACGCGGCAg -3'
miRNA:   3'- -CCGGGCCGG----ACGu------GAA-GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 28434 0.66 0.435878
Target:  5'- cGGCCCuugaGGCgCUGCACg-CGcACG-GGCAu -3'
miRNA:   3'- -CCGGG----CCG-GACGUGaaGC-UGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 29774 0.73 0.143578
Target:  5'- cGCCCGGCgUaGUGCcggaCGGCGCGGCAc -3'
miRNA:   3'- cCGGGCCGgA-CGUGaa--GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 29816 0.66 0.408871
Target:  5'- aGCgCCGG-CUGCGCUUCGgAUGCuGCu -3'
miRNA:   3'- cCG-GGCCgGACGUGAAGC-UGCGcCGu -5'
23991 5' -61.6 NC_005262.1 + 30232 0.69 0.297581
Target:  5'- cGGCaUCcGCCgGCGCUUCGGCgaccagcaGCGGCAc -3'
miRNA:   3'- -CCG-GGcCGGaCGUGAAGCUG--------CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 31643 0.67 0.358113
Target:  5'- aGCUCGGuCUUGCGCUg-GAUGaCGGCGu -3'
miRNA:   3'- cCGGGCC-GGACGUGAagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 32119 0.66 0.445106
Target:  5'- gGGUuuUCGGCCUGCAUcau--CGCGGCc -3'
miRNA:   3'- -CCG--GGCCGGACGUGaagcuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 32730 0.68 0.350094
Target:  5'- cGGCgugcugCCGGCCgacCACUccgugagCGACGCGGUg -3'
miRNA:   3'- -CCG------GGCCGGac-GUGAa------GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 32799 0.68 0.334441
Target:  5'- cGCgCCGGCCauCGCgUUCGACGuCGGCc -3'
miRNA:   3'- cCG-GGCCGGacGUG-AAGCUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 32973 0.76 0.093701
Target:  5'- cGGCuuGGCCg--ACgUUCGACGCGGCGa -3'
miRNA:   3'- -CCGggCCGGacgUG-AAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 33373 0.8 0.047214
Target:  5'- cGCCCGGCgUGCGCg-CGAUGCGGUAc -3'
miRNA:   3'- cCGGGCCGgACGUGaaGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 34466 0.67 0.36626
Target:  5'- uGCCCGgaGCCUacggcguucgaGCACaUCcGCGCGGCGg -3'
miRNA:   3'- cCGGGC--CGGA-----------CGUGaAGcUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 34937 0.71 0.216642
Target:  5'- uGGCCguguucuuCGGCg-GCAagUUCGACGCGGCGc -3'
miRNA:   3'- -CCGG--------GCCGgaCGUg-AAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 35069 0.73 0.159401
Target:  5'- uGCCCGG-CUGCcuggaGCUUCGACuuGCGGCc -3'
miRNA:   3'- cCGGGCCgGACG-----UGAAGCUG--CGCCGu -5'
23991 5' -61.6 NC_005262.1 + 35845 0.66 0.445106
Target:  5'- cGGCgCCGcgaccGCCcagauguuugUGCGCggCGACGCGcGCAc -3'
miRNA:   3'- -CCG-GGC-----CGG----------ACGUGaaGCUGCGC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.