miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 61260 0.69 0.277019
Target:  5'- cGGCCUGGgCCaGUucgugacagACUcgaUCGGCGCGGCc -3'
miRNA:   3'- -CCGGGCC-GGaCG---------UGA---AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 61169 0.66 0.42676
Target:  5'- aGGUuaUCGGgCUGCGcCUUCGuCGaCGGCGu -3'
miRNA:   3'- -CCG--GGCCgGACGU-GAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60832 0.74 0.129202
Target:  5'- uGCgCCGGCCUaCGCgaUCGGCGUGGCGa -3'
miRNA:   3'- cCG-GGCCGGAcGUGa-AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60596 0.68 0.334441
Target:  5'- cGCUcuuggCGGCCUGCGCcgcgCGGCcCGGCGu -3'
miRNA:   3'- cCGG-----GCCGGACGUGaa--GCUGcGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60167 0.66 0.417757
Target:  5'- uGCCC-GUCaGCGCgUCGcGCGCGGCGu -3'
miRNA:   3'- cCGGGcCGGaCGUGaAGC-UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60162 0.69 0.297581
Target:  5'- -aCCCGGCCgccgugaagGCGC-UCGGCcaguggGCGGCAa -3'
miRNA:   3'- ccGGGCCGGa--------CGUGaAGCUG------CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60114 0.66 0.445106
Target:  5'- uGGUCgGGCaCgaggGCGCcagCGuCGCGGCGa -3'
miRNA:   3'- -CCGGgCCG-Ga---CGUGaa-GCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 59257 0.69 0.263951
Target:  5'- gGGCCCGuGagCUGCuuCUUCGcguccuccaugcGCGCGGCGa -3'
miRNA:   3'- -CCGGGC-Cg-GACGu-GAAGC------------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 59212 0.84 0.024851
Target:  5'- cGGCCCGGCCgguuCGCcUCGGCGCGGUAg -3'
miRNA:   3'- -CCGGGCCGGac--GUGaAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 59139 0.66 0.408871
Target:  5'- cGGCCgGGCC-GCG--UCGcCGCGcGCAu -3'
miRNA:   3'- -CCGGgCCGGaCGUgaAGCuGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 58997 0.67 0.358113
Target:  5'- -uCCCGcGCCgucGCGCUUCGAccgucugcaagcCGCGGUg -3'
miRNA:   3'- ccGGGC-CGGa--CGUGAAGCU------------GCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 58990 0.7 0.257607
Target:  5'- gGGCcgCCGGCCUGaucg-CGcaGCGCGGCAg -3'
miRNA:   3'- -CCG--GGCCGGACgugaaGC--UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 58922 0.68 0.334441
Target:  5'- cGGCCCGaCCgaugGCGCgcgcuucucggUCGGCGCGcaGCAg -3'
miRNA:   3'- -CCGGGCcGGa---CGUGa----------AGCUGCGC--CGU- -5'
23991 5' -61.6 NC_005262.1 + 57596 0.67 0.382933
Target:  5'- uGCCCGGCgcgacgCUGaACUUCGGCGCcucgucGGCc -3'
miRNA:   3'- cCGGGCCG------GACgUGAAGCUGCG------CCGu -5'
23991 5' -61.6 NC_005262.1 + 57546 0.68 0.32681
Target:  5'- aGGUcguaCCGGUCacGCGCaucgagacgUUCGACGCGGCu -3'
miRNA:   3'- -CCG----GGCCGGa-CGUG---------AAGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 57021 0.71 0.206007
Target:  5'- cGGaUCGGCgUGCGCUucUCGAgCGCGGCc -3'
miRNA:   3'- -CCgGGCCGgACGUGA--AGCU-GCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 56280 0.68 0.334441
Target:  5'- gGGCUCGGCgaGCAg-UCGGCgaagaaccGCGGCu -3'
miRNA:   3'- -CCGGGCCGgaCGUgaAGCUG--------CGCCGu -5'
23991 5' -61.6 NC_005262.1 + 56230 0.67 0.374534
Target:  5'- uGGUUCaGCUUGCugUucgggucgcUCGGCGCGGUc -3'
miRNA:   3'- -CCGGGcCGGACGugA---------AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 55637 0.67 0.391457
Target:  5'- aGCCgGGCCgcGCGC-UCGugGCcGCGu -3'
miRNA:   3'- cCGGgCCGGa-CGUGaAGCugCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 55503 0.69 0.283744
Target:  5'- cGCCUccaGCCgGCGCUcgagcugcUCGAUGCGGCGc -3'
miRNA:   3'- cCGGGc--CGGaCGUGA--------AGCUGCGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.