miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 55307 0.73 0.143578
Target:  5'- aGCgCGGCCUGCGCgacgaagCGACGgCGGUu -3'
miRNA:   3'- cCGgGCCGGACGUGaa-----GCUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 55006 0.66 0.454443
Target:  5'- cGCCCGGCagcgucagGUGCgagccgUCGaacugGCGCGGCGc -3'
miRNA:   3'- cCGGGCCGga------CGUGa-----AGC-----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53798 0.69 0.277019
Target:  5'- cGCCaCGGCCU-----UCGACGCGGCc -3'
miRNA:   3'- cCGG-GCCGGAcgugaAGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 53786 0.69 0.270421
Target:  5'- cGGCgauaCCGGCaaccugaUGCAggUCGACaGCGGCAc -3'
miRNA:   3'- -CCG----GGCCGg------ACGUgaAGCUG-CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53700 0.69 0.277019
Target:  5'- cGCCCGGCUcgggaacgaccgUGUAC-UCGuuuGCGCGGUAc -3'
miRNA:   3'- cCGGGCCGG------------ACGUGaAGC---UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53588 0.7 0.257607
Target:  5'- cGGCCCcugcGGCguCUGCACUUCGGC-CGuGCc -3'
miRNA:   3'- -CCGGG----CCG--GACGUGAAGCUGcGC-CGu -5'
23991 5' -61.6 NC_005262.1 + 53141 0.69 0.290598
Target:  5'- --gCCGcGCgaGUuCUUCGACGCGGCGa -3'
miRNA:   3'- ccgGGC-CGgaCGuGAAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53049 0.67 0.374534
Target:  5'- uGCCCGGCUcgaGCACcUUGcCGcCGGCGa -3'
miRNA:   3'- cCGGGCCGGa--CGUGaAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 52937 0.75 0.113105
Target:  5'- cGGCCUGcgccGCCUGgGCUUCGcCGgCGGCAa -3'
miRNA:   3'- -CCGGGC----CGGACgUGAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 51957 0.7 0.251388
Target:  5'- cGGCUCGGUCgUGCuCgcgUCGuuCGCGGCGc -3'
miRNA:   3'- -CCGGGCCGG-ACGuGa--AGCu-GCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 51461 0.69 0.263951
Target:  5'- cGGCCuUGGCCgGCgucGCggaCGGCGCGGUg -3'
miRNA:   3'- -CCGG-GCCGGaCG---UGaa-GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 51044 0.67 0.374534
Target:  5'- -aCUCGGCCUGCgucgGCUucagcUCGGCGgcCGGCAc -3'
miRNA:   3'- ccGGGCCGGACG----UGA-----AGCUGC--GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 50436 0.69 0.290598
Target:  5'- cGCUcgCGGUCgucgcggGCGCUUCGuccuGCGCGGCGg -3'
miRNA:   3'- cCGG--GCCGGa------CGUGAAGC----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 50360 0.75 0.119306
Target:  5'- gGGCUCGGCCggcgcggGCGCgcccUCGuuGCGGCGg -3'
miRNA:   3'- -CCGGGCCGGa------CGUGa---AGCugCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 50194 0.71 0.206007
Target:  5'- cGCUCGGCCggcuuCugUUCG-CGCGGCGc -3'
miRNA:   3'- cCGGGCCGGac---GugAAGCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 50108 0.72 0.172285
Target:  5'- cGGCUCGGgCUuCACUUCGgugggcgccgGCGCGGCu -3'
miRNA:   3'- -CCGGGCCgGAcGUGAAGC----------UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 49922 0.7 0.257607
Target:  5'- cGGCaCCgGGCCUucgcGCGCUccaUCG-CGCGGCc -3'
miRNA:   3'- -CCG-GG-CCGGA----CGUGA---AGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 49641 0.71 0.222133
Target:  5'- uGGCCucgcgaucggCGGCCUGCAa---GGCGgCGGCAu -3'
miRNA:   3'- -CCGG----------GCCGGACGUgaagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 48633 0.68 0.32681
Target:  5'- aGCCCGGCCgcuucaagGUGCU--GACGCaGCAg -3'
miRNA:   3'- cCGGGCCGGa-------CGUGAagCUGCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 48630 0.74 0.125822
Target:  5'- cGGCCCGGCucCUGCGCaUCGAgaCGCGauuGCAg -3'
miRNA:   3'- -CCGGGCCG--GACGUGaAGCU--GCGC---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.