miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 41413 0.69 0.273045
Target:  5'- cGGCgCCGGCaccucguaUGCGCcgacuaacacgggCGGCGCGGCu -3'
miRNA:   3'- -CCG-GGCCGg-------ACGUGaa-----------GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 49641 0.71 0.222133
Target:  5'- uGGCCucgcgaucggCGGCCUGCAa---GGCGgCGGCAu -3'
miRNA:   3'- -CCGG----------GCCGGACGUgaagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 2017 0.71 0.222133
Target:  5'- cGCCaCGGCgCUGCuucguGCUgcUCGACGgGGCGc -3'
miRNA:   3'- cCGG-GCCG-GACG-----UGA--AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 16099 0.7 0.227743
Target:  5'- cGGCgCgGGCCUGaaggACUuccUCGGCGCGcGCAc -3'
miRNA:   3'- -CCG-GgCCGGACg---UGA---AGCUGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 15855 0.7 0.239322
Target:  5'- cGGCacucgaCGGCCaUGUACcUCGACGCgauGGCGc -3'
miRNA:   3'- -CCGg-----GCCGG-ACGUGaAGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 43837 0.7 0.239322
Target:  5'- cGGgCCGGCCgcGCGCggCGguGCGCcGGCAg -3'
miRNA:   3'- -CCgGGCCGGa-CGUGaaGC--UGCG-CCGU- -5'
23991 5' -61.6 NC_005262.1 + 12906 0.69 0.263311
Target:  5'- -cCCCGGCCUGCuggACgaCGacaaccuGCGCGGCGc -3'
miRNA:   3'- ccGGGCCGGACG---UGaaGC-------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 17072 0.69 0.263951
Target:  5'- cGGCgCCGauagGCGCgcccgUCGACGCGGCGg -3'
miRNA:   3'- -CCG-GGCcggaCGUGa----AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53786 0.69 0.270421
Target:  5'- cGGCgauaCCGGCaaccugaUGCAggUCGACaGCGGCAc -3'
miRNA:   3'- -CCG----GGCCGg------ACGUgaAGCUG-CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 34937 0.71 0.216642
Target:  5'- uGGCCguguucuuCGGCg-GCAagUUCGACGCGGCGc -3'
miRNA:   3'- -CCGG--------GCCGgaCGUg-AAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45228 0.71 0.211267
Target:  5'- gGGCUCGGCCUgaacgccgGCAacUCGGCGacCGGCAa -3'
miRNA:   3'- -CCGGGCCGGA--------CGUgaAGCUGC--GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 20579 0.71 0.200861
Target:  5'- aGCCCGGCgaGCAg--CG-CGCGGCGc -3'
miRNA:   3'- cCGGGCCGgaCGUgaaGCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 43056 0.75 0.113105
Target:  5'- -aCCCGGCCgGCACcgcgCGcCGCGGCAg -3'
miRNA:   3'- ccGGGCCGGaCGUGaa--GCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 52937 0.75 0.113105
Target:  5'- cGGCCUGcgccGCCUGgGCUUCGcCGgCGGCAa -3'
miRNA:   3'- -CCGGGC----CGGACgUGAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60832 0.74 0.129202
Target:  5'- uGCgCCGGCCUaCGCgaUCGGCGUGGCGa -3'
miRNA:   3'- cCG-GGCCGGAcGUGa-AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 29774 0.73 0.143578
Target:  5'- cGCCCGGCgUaGUGCcggaCGGCGCGGCAc -3'
miRNA:   3'- cCGGGCCGgA-CGUGaa--GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 2647 0.73 0.159401
Target:  5'- cGGCCCauGCCUGCGCggCGccGgGCGGCGu -3'
miRNA:   3'- -CCGGGc-CGGACGUGaaGC--UgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 3725 0.73 0.163596
Target:  5'- aGCUgGGCCUGCGCcuggaugggUUCcGCGCGGCu -3'
miRNA:   3'- cCGGgCCGGACGUG---------AAGcUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 26810 0.72 0.190904
Target:  5'- cGCCCGGCCuUGCAUcggaaUUCGAgGCcGCGa -3'
miRNA:   3'- cCGGGCCGG-ACGUG-----AAGCUgCGcCGU- -5'
23991 5' -61.6 NC_005262.1 + 24784 0.71 0.195828
Target:  5'- aGCCgGGCgaGCACUUCGAcauCGCgaagGGCAa -3'
miRNA:   3'- cCGGgCCGgaCGUGAAGCU---GCG----CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.