miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 2647 0.73 0.159401
Target:  5'- cGGCCCauGCCUGCGCggCGccGgGCGGCGu -3'
miRNA:   3'- -CCGGGc-CGGACGUGaaGC--UgCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 29774 0.73 0.143578
Target:  5'- cGCCCGGCgUaGUGCcggaCGGCGCGGCAc -3'
miRNA:   3'- cCGGGCCGgA-CGUGaa--GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60832 0.74 0.129202
Target:  5'- uGCgCCGGCCUaCGCgaUCGGCGUGGCGa -3'
miRNA:   3'- cCG-GGCCGGAcGUGa-AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 52937 0.75 0.113105
Target:  5'- cGGCCUGcgccGCCUGgGCUUCGcCGgCGGCAa -3'
miRNA:   3'- -CCGGGC----CGGACgUGAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 43056 0.75 0.113105
Target:  5'- -aCCCGGCCgGCACcgcgCGcCGCGGCAg -3'
miRNA:   3'- ccGGGCCGGaCGUGaa--GCuGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 16099 0.7 0.227743
Target:  5'- cGGCgCgGGCCUGaaggACUuccUCGGCGCGcGCAc -3'
miRNA:   3'- -CCG-GgCCGGACg---UGA---AGCUGCGC-CGU- -5'
23991 5' -61.6 NC_005262.1 + 15855 0.7 0.239322
Target:  5'- cGGCacucgaCGGCCaUGUACcUCGACGCgauGGCGc -3'
miRNA:   3'- -CCGg-----GCCGG-ACGUGaAGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 40342 0.68 0.311935
Target:  5'- cGGCUcaCGGCCgGCGCgcugaugUCGAuCGuCGGCGa -3'
miRNA:   3'- -CCGG--GCCGGaCGUGa------AGCU-GC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 16348 0.68 0.304693
Target:  5'- uGGCUCGGC--GCGCUgaUCGGCGCcgccgcguucGGCAa -3'
miRNA:   3'- -CCGGGCCGgaCGUGA--AGCUGCG----------CCGU- -5'
23991 5' -61.6 NC_005262.1 + 6455 0.69 0.297581
Target:  5'- cGGCuCCGGCgaGaCGCcggcaUCGACGCGGg- -3'
miRNA:   3'- -CCG-GGCCGgaC-GUGa----AGCUGCGCCgu -5'
23991 5' -61.6 NC_005262.1 + 60162 0.69 0.297581
Target:  5'- -aCCCGGCCgccgugaagGCGC-UCGGCcaguggGCGGCAa -3'
miRNA:   3'- ccGGGCCGGa--------CGUGaAGCUG------CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53141 0.69 0.290598
Target:  5'- --gCCGcGCgaGUuCUUCGACGCGGCGa -3'
miRNA:   3'- ccgGGC-CGgaCGuGAAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 11093 0.69 0.290598
Target:  5'- cGGCCC-GCUgGCACgcUUGGCGgGGCAa -3'
miRNA:   3'- -CCGGGcCGGaCGUGa-AGCUGCgCCGU- -5'
23991 5' -61.6 NC_005262.1 + 6081 0.69 0.279694
Target:  5'- aGGCCgCGGCCUucuucucggugauccGCACguugCGGaacgGCGGCAc -3'
miRNA:   3'- -CCGG-GCCGGA---------------CGUGaa--GCUg---CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 61260 0.69 0.277019
Target:  5'- cGGCCUGGgCCaGUucgugacagACUcgaUCGGCGCGGCc -3'
miRNA:   3'- -CCGGGCC-GGaCG---------UGA---AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 41413 0.69 0.273045
Target:  5'- cGGCgCCGGCaccucguaUGCGCcgacuaacacgggCGGCGCGGCu -3'
miRNA:   3'- -CCG-GGCCGg-------ACGUGaa-----------GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 53786 0.69 0.270421
Target:  5'- cGGCgauaCCGGCaaccugaUGCAggUCGACaGCGGCAc -3'
miRNA:   3'- -CCG----GGCCGg------ACGUgaAGCUG-CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 17072 0.69 0.263951
Target:  5'- cGGCgCCGauagGCGCgcccgUCGACGCGGCGg -3'
miRNA:   3'- -CCG-GGCcggaCGUGa----AGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 12906 0.69 0.263311
Target:  5'- -cCCCGGCCUGCuggACgaCGacaaccuGCGCGGCGc -3'
miRNA:   3'- ccGGGCCGGACG---UGaaGC-------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 43837 0.7 0.239322
Target:  5'- cGGgCCGGCCgcGCGCggCGguGCGCcGGCAg -3'
miRNA:   3'- -CCgGGCCGGa-CGUGaaGC--UGCG-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.