miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 48560 0.66 0.454443
Target:  5'- cGCCCGuGCCcacGCGgcUCGcgauccGCGCGGCAu -3'
miRNA:   3'- cCGGGC-CGGa--CGUgaAGC------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 31643 0.67 0.358113
Target:  5'- aGCUCGGuCUUGCGCUg-GAUGaCGGCGu -3'
miRNA:   3'- cCGGGCC-GGACGUGAagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 44807 0.68 0.350094
Target:  5'- aGUCgCGGCCgagcUGCAUUUCcucgcGCGCGGCGa -3'
miRNA:   3'- cCGG-GCCGG----ACGUGAAGc----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 59212 0.84 0.024851
Target:  5'- cGGCCCGGCCgguuCGCcUCGGCGCGGUAg -3'
miRNA:   3'- -CCGGGCCGGac--GUGaAGCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 10531 0.66 0.435878
Target:  5'- cGCCCGGCUUGCcgaGCaUCuGcAUGCGGUc -3'
miRNA:   3'- cCGGGCCGGACG---UGaAG-C-UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 15389 0.66 0.435878
Target:  5'- cGCCCGcCCaUGCGCggcgaaUCGACGacuGGCAg -3'
miRNA:   3'- cCGGGCcGG-ACGUGa-----AGCUGCg--CCGU- -5'
23991 5' -61.6 NC_005262.1 + 61169 0.66 0.42676
Target:  5'- aGGUuaUCGGgCUGCGcCUUCGuCGaCGGCGu -3'
miRNA:   3'- -CCG--GGCCgGACGU-GAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 60167 0.66 0.417757
Target:  5'- uGCCC-GUCaGCGCgUCGcGCGCGGCGu -3'
miRNA:   3'- cCGGGcCGGaCGUGaAGC-UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45781 0.67 0.391457
Target:  5'- cGGCugCCGGCCcucgaUGCGCa-CGAagUGCGGCAc -3'
miRNA:   3'- -CCG--GGCCGG-----ACGUGaaGCU--GCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 25569 0.67 0.36626
Target:  5'- aGCUCGGCCUucGUGCagUUGGCgaGCGGCAu -3'
miRNA:   3'- cCGGGCCGGA--CGUGa-AGCUG--CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53049 0.67 0.374534
Target:  5'- uGCCCGGCUcgaGCACcUUGcCGcCGGCGa -3'
miRNA:   3'- cCGGGCCGGa--CGUGaAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45502 0.67 0.391457
Target:  5'- aGCCCGGCCga-GUUUUG-CGCGGCu -3'
miRNA:   3'- cCGGGCCGGacgUGAAGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 55006 0.66 0.454443
Target:  5'- cGCCCGGCagcgucagGUGCgagccgUCGaacugGCGCGGCGc -3'
miRNA:   3'- cCGGGCCGga------CGUGa-----AGC-----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 56230 0.67 0.374534
Target:  5'- uGGUUCaGCUUGCugUucgggucgcUCGGCGCGGUc -3'
miRNA:   3'- -CCGGGcCGGACGugA---------AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 32119 0.66 0.445106
Target:  5'- gGGUuuUCGGCCUGCAUcau--CGCGGCc -3'
miRNA:   3'- -CCG--GGCCGGACGUGaagcuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 29816 0.66 0.408871
Target:  5'- aGCgCCGG-CUGCGCUUCGgAUGCuGCu -3'
miRNA:   3'- cCG-GGCCgGACGUGAAGC-UGCGcCGu -5'
23991 5' -61.6 NC_005262.1 + 51044 0.67 0.374534
Target:  5'- -aCUCGGCCUGCgucgGCUucagcUCGGCGgcCGGCAc -3'
miRNA:   3'- ccGGGCCGGACG----UGA-----AGCUGC--GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 44862 0.67 0.358113
Target:  5'- aGCUCGGCCUGCcg--CG-CGCuGGCGa -3'
miRNA:   3'- cCGGGCCGGACGugaaGCuGCG-CCGU- -5'
23991 5' -61.6 NC_005262.1 + 5347 0.66 0.439556
Target:  5'- aGGCauCCGGCUUcgaggcauucaaucaGCGCggcgUCGACGCcacGGCGa -3'
miRNA:   3'- -CCG--GGCCGGA---------------CGUGa---AGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 28434 0.66 0.435878
Target:  5'- cGGCCCuugaGGCgCUGCACg-CGcACG-GGCAu -3'
miRNA:   3'- -CCGGG----CCG-GACGUGaaGC-UGCgCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.