miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23991 5' -61.6 NC_005262.1 + 5274 0.68 0.319308
Target:  5'- cGCgCCGGCCgcgcccGCGCccgCGACGcCGGCc -3'
miRNA:   3'- cCG-GGCCGGa-----CGUGaa-GCUGC-GCCGu -5'
23991 5' -61.6 NC_005262.1 + 44807 0.68 0.350094
Target:  5'- aGUCgCGGCCgagcUGCAUUUCcucgcGCGCGGCGa -3'
miRNA:   3'- cCGG-GCCGG----ACGUGAAGc----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 45502 0.67 0.391457
Target:  5'- aGCCCGGCCga-GUUUUG-CGCGGCu -3'
miRNA:   3'- cCGGGCCGGacgUGAAGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 5347 0.66 0.439556
Target:  5'- aGGCauCCGGCUUcgaggcauucaaucaGCGCggcgUCGACGCcacGGCGa -3'
miRNA:   3'- -CCG--GGCCGGA---------------CGUGa---AGCUGCG---CCGU- -5'
23991 5' -61.6 NC_005262.1 + 51461 0.69 0.263951
Target:  5'- cGGCCuUGGCCgGCgucGCggaCGGCGCGGUg -3'
miRNA:   3'- -CCGG-GCCGGaCG---UGaa-GCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 30232 0.69 0.297581
Target:  5'- cGGCaUCcGCCgGCGCUUCGGCgaccagcaGCGGCAc -3'
miRNA:   3'- -CCG-GGcCGGaCGUGAAGCUG--------CGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 31643 0.67 0.358113
Target:  5'- aGCUCGGuCUUGCGCUg-GAUGaCGGCGu -3'
miRNA:   3'- cCGGGCC-GGACGUGAagCUGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 32119 0.66 0.445106
Target:  5'- gGGUuuUCGGCCUGCAUcau--CGCGGCc -3'
miRNA:   3'- -CCG--GGCCGGACGUGaagcuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 6155 0.68 0.304693
Target:  5'- aGGCCgCGGCCUGaCGCaaccccgUGGUGCGGUAu -3'
miRNA:   3'- -CCGG-GCCGGAC-GUGaa-----GCUGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 55006 0.66 0.454443
Target:  5'- cGCCCGGCagcgucagGUGCgagccgUCGaacugGCGCGGCGc -3'
miRNA:   3'- cCGGGCCGga------CGUGa-----AGC-----UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 44862 0.67 0.358113
Target:  5'- aGCUCGGCCUGCcg--CG-CGCuGGCGa -3'
miRNA:   3'- cCGGGCCGGACGugaaGCuGCG-CCGU- -5'
23991 5' -61.6 NC_005262.1 + 46844 0.68 0.319308
Target:  5'- cGCC--GCCUGUACgaccggCGugGCGGCGa -3'
miRNA:   3'- cCGGgcCGGACGUGaa----GCugCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 56230 0.67 0.374534
Target:  5'- uGGUUCaGCUUGCugUucgggucgcUCGGCGCGGUc -3'
miRNA:   3'- -CCGGGcCGGACGugA---------AGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 45781 0.67 0.391457
Target:  5'- cGGCugCCGGCCcucgaUGCGCa-CGAagUGCGGCAc -3'
miRNA:   3'- -CCG--GGCCGG-----ACGUGaaGCU--GCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 61169 0.66 0.42676
Target:  5'- aGGUuaUCGGgCUGCGcCUUCGuCGaCGGCGu -3'
miRNA:   3'- -CCG--GGCCgGACGU-GAAGCuGC-GCCGU- -5'
23991 5' -61.6 NC_005262.1 + 10531 0.66 0.435878
Target:  5'- cGCCCGGCUUGCcgaGCaUCuGcAUGCGGUc -3'
miRNA:   3'- cCGGGCCGGACG---UGaAG-C-UGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 49922 0.7 0.257607
Target:  5'- cGGCaCCgGGCCUucgcGCGCUccaUCG-CGCGGCc -3'
miRNA:   3'- -CCG-GG-CCGGA----CGUGA---AGCuGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 59257 0.69 0.263951
Target:  5'- gGGCCCGuGagCUGCuuCUUCGcguccuccaugcGCGCGGCGa -3'
miRNA:   3'- -CCGGGC-Cg-GACGu-GAAGC------------UGCGCCGU- -5'
23991 5' -61.6 NC_005262.1 + 53798 0.69 0.277019
Target:  5'- cGCCaCGGCCU-----UCGACGCGGCc -3'
miRNA:   3'- cCGG-GCCGGAcgugaAGCUGCGCCGu -5'
23991 5' -61.6 NC_005262.1 + 50436 0.69 0.290598
Target:  5'- cGCUcgCGGUCgucgcggGCGCUUCGuccuGCGCGGCGg -3'
miRNA:   3'- cCGG--GCCGGa------CGUGAAGC----UGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.