miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23992 3' -59.3 NC_005262.1 + 13746 0.66 0.555601
Target:  5'- uGCCAGgcauuCAGCCuCGCGGGuCUGCGu- -3'
miRNA:   3'- -UGGUCagc--GUCGG-GCGCCU-GAUGCug -5'
23992 3' -59.3 NC_005262.1 + 2639 0.66 0.545208
Target:  5'- gACCAGaUCgGCccauGCCUGCGcGGCgccggGCGGCg -3'
miRNA:   3'- -UGGUC-AG-CGu---CGGGCGC-CUGa----UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 42751 0.66 0.542102
Target:  5'- cGCCAcggcUCGCAGagccagagcucuuuCCCGCGGAagGCGGCc -3'
miRNA:   3'- -UGGUc---AGCGUC--------------GGGCGCCUgaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5178 0.66 0.534879
Target:  5'- gGCCGgcGUCGCGGgC-GCGGGC-GCGGCc -3'
miRNA:   3'- -UGGU--CAGCGUCgGgCGCCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 17181 0.66 0.534879
Target:  5'- gACCuccUCGCGGCCCGCcgcgucgacGGGCgcgccuauCGGCg -3'
miRNA:   3'- -UGGuc-AGCGUCGGGCG---------CCUGau------GCUG- -5'
23992 3' -59.3 NC_005262.1 + 40900 0.66 0.534879
Target:  5'- uGCCcGUCGCAGcCCCGUaGAUgcCGAUc -3'
miRNA:   3'- -UGGuCAGCGUC-GGGCGcCUGauGCUG- -5'
23992 3' -59.3 NC_005262.1 + 50439 0.66 0.532821
Target:  5'- cGCCGcUCGCGGUcgUCGCGGGCgcuucguccugcGCGGCg -3'
miRNA:   3'- -UGGUcAGCGUCG--GGCGCCUGa-----------UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 1486 0.66 0.524619
Target:  5'- uGCCGG-CGCuGCCgcugcaucUGCGGagggagGCUGCGGCg -3'
miRNA:   3'- -UGGUCaGCGuCGG--------GCGCC------UGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 38427 0.66 0.523597
Target:  5'- gGCCGG-CGCGGUCgagaucaCGcCGGACgACGGCa -3'
miRNA:   3'- -UGGUCaGCGUCGG-------GC-GCCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 58185 0.66 0.514435
Target:  5'- cGCCuuuAGUguuucCGCGucGCCUGCGGAgaGCGGCg -3'
miRNA:   3'- -UGG---UCA-----GCGU--CGGGCGCCUgaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 38539 0.66 0.511396
Target:  5'- uACaCGGUCGCGGUgacgaucggcaccgCCGCGGGCcggAUGAa -3'
miRNA:   3'- -UG-GUCAGCGUCG--------------GGCGCCUGa--UGCUg -5'
23992 3' -59.3 NC_005262.1 + 28809 0.66 0.504332
Target:  5'- uCCGGgcgCGCGGCCuCGCGGcggaACUcguCGAUa -3'
miRNA:   3'- uGGUCa--GCGUCGG-GCGCC----UGAu--GCUG- -5'
23992 3' -59.3 NC_005262.1 + 31379 0.67 0.494316
Target:  5'- gACCcauuGUCGCcGCgaucuuggCCGCGGACgacUGCGGCu -3'
miRNA:   3'- -UGGu---CAGCGuCG--------GGCGCCUG---AUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 44335 0.67 0.494316
Target:  5'- cACCGGUCuGguGCCCGCaaaGAacguCGACg -3'
miRNA:   3'- -UGGUCAG-CguCGGGCGc--CUgau-GCUG- -5'
23992 3' -59.3 NC_005262.1 + 47836 0.67 0.494316
Target:  5'- uGCCGGguucgcCGCGGCCgGCGGcgcaccagauACagGCGGCg -3'
miRNA:   3'- -UGGUCa-----GCGUCGGgCGCC----------UGa-UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 37140 0.67 0.484393
Target:  5'- cGCCuGUUGUGGCCgGaUGGGCUcccuACGACc -3'
miRNA:   3'- -UGGuCAGCGUCGGgC-GCCUGA----UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 47903 0.67 0.484393
Target:  5'- aACCAGUUGaGGCCUaGCGGuACacgaUGCGACc -3'
miRNA:   3'- -UGGUCAGCgUCGGG-CGCC-UG----AUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 30210 0.67 0.474565
Target:  5'- gACCAG-CaGCGGCacgauCGUGGGCUucGCGGCg -3'
miRNA:   3'- -UGGUCaG-CGUCGg----GCGCCUGA--UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 6759 0.67 0.464838
Target:  5'- uCCAGUucCGCcGCUCGUGGAUcgaggACGGCg -3'
miRNA:   3'- uGGUCA--GCGuCGGGCGCCUGa----UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 61999 0.67 0.464838
Target:  5'- aGCCGG-CGCAGCCCuGCGG-CguauCGuCa -3'
miRNA:   3'- -UGGUCaGCGUCGGG-CGCCuGau--GCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.