Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23992 | 3' | -59.3 | NC_005262.1 | + | 1486 | 0.66 | 0.524619 |
Target: 5'- uGCCGG-CGCuGCCgcugcaucUGCGGagggagGCUGCGGCg -3' miRNA: 3'- -UGGUCaGCGuCGG--------GCGCC------UGAUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 58185 | 0.66 | 0.514435 |
Target: 5'- cGCCuuuAGUguuucCGCGucGCCUGCGGAgaGCGGCg -3' miRNA: 3'- -UGG---UCA-----GCGU--CGGGCGCCUgaUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 38539 | 0.66 | 0.511396 |
Target: 5'- uACaCGGUCGCGGUgacgaucggcaccgCCGCGGGCcggAUGAa -3' miRNA: 3'- -UG-GUCAGCGUCG--------------GGCGCCUGa--UGCUg -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 38427 | 0.66 | 0.523597 |
Target: 5'- gGCCGG-CGCGGUCgagaucaCGcCGGACgACGGCa -3' miRNA: 3'- -UGGUCaGCGUCGG-------GC-GCCUGaUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 40900 | 0.66 | 0.534879 |
Target: 5'- uGCCcGUCGCAGcCCCGUaGAUgcCGAUc -3' miRNA: 3'- -UGGuCAGCGUC-GGGCGcCUGauGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 17181 | 0.66 | 0.534879 |
Target: 5'- gACCuccUCGCGGCCCGCcgcgucgacGGGCgcgccuauCGGCg -3' miRNA: 3'- -UGGuc-AGCGUCGGGCG---------CCUGau------GCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 28809 | 0.66 | 0.504332 |
Target: 5'- uCCGGgcgCGCGGCCuCGCGGcggaACUcguCGAUa -3' miRNA: 3'- uGGUCa--GCGUCGG-GCGCC----UGAu--GCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 50439 | 0.66 | 0.532821 |
Target: 5'- cGCCGcUCGCGGUcgUCGCGGGCgcuucguccugcGCGGCg -3' miRNA: 3'- -UGGUcAGCGUCG--GGCGCCUGa-----------UGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 42751 | 0.66 | 0.542102 |
Target: 5'- cGCCAcggcUCGCAGagccagagcucuuuCCCGCGGAagGCGGCc -3' miRNA: 3'- -UGGUc---AGCGUC--------------GGGCGCCUgaUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 5178 | 0.66 | 0.534879 |
Target: 5'- gGCCGgcGUCGCGGgC-GCGGGC-GCGGCc -3' miRNA: 3'- -UGGU--CAGCGUCgGgCGCCUGaUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 13746 | 0.66 | 0.555601 |
Target: 5'- uGCCAGgcauuCAGCCuCGCGGGuCUGCGu- -3' miRNA: 3'- -UGGUCagc--GUCGG-GCGCCU-GAUGCug -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 2639 | 0.66 | 0.545208 |
Target: 5'- gACCAGaUCgGCccauGCCUGCGcGGCgccggGCGGCg -3' miRNA: 3'- -UGGUC-AG-CGu---CGGGCGC-CUGa----UGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 44335 | 0.67 | 0.494316 |
Target: 5'- cACCGGUCuGguGCCCGCaaaGAacguCGACg -3' miRNA: 3'- -UGGUCAG-CguCGGGCGc--CUgau-GCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 37140 | 0.67 | 0.484393 |
Target: 5'- cGCCuGUUGUGGCCgGaUGGGCUcccuACGACc -3' miRNA: 3'- -UGGuCAGCGUCGGgC-GCCUGA----UGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 46478 | 0.67 | 0.463871 |
Target: 5'- gGCCAcGaCGCAGCCCGuCGacaugagcacuccGACcGCGACg -3' miRNA: 3'- -UGGU-CaGCGUCGGGC-GC-------------CUGaUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 15293 | 0.67 | 0.445702 |
Target: 5'- uGCCAGUCGUcgauucGCCgCGCauGGGCggGCGGCc -3' miRNA: 3'- -UGGUCAGCGu-----CGG-GCG--CCUGa-UGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 30210 | 0.67 | 0.474565 |
Target: 5'- gACCAG-CaGCGGCacgauCGUGGGCUucGCGGCg -3' miRNA: 3'- -UGGUCaG-CGUCGg----GCGCCUGA--UGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 47903 | 0.67 | 0.484393 |
Target: 5'- aACCAGUUGaGGCCUaGCGGuACacgaUGCGACc -3' miRNA: 3'- -UGGUCAGCgUCGGG-CGCC-UG----AUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 31379 | 0.67 | 0.494316 |
Target: 5'- gACCcauuGUCGCcGCgaucuuggCCGCGGACgacUGCGGCu -3' miRNA: 3'- -UGGu---CAGCGuCG--------GGCGCCUG---AUGCUG- -5' |
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23992 | 3' | -59.3 | NC_005262.1 | + | 47836 | 0.67 | 0.494316 |
Target: 5'- uGCCGGguucgcCGCGGCCgGCGGcgcaccagauACagGCGGCg -3' miRNA: 3'- -UGGUCa-----GCGUCGGgCGCC----------UGa-UGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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