miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23992 3' -59.3 NC_005262.1 + 15346 1.09 0.000453
Target:  5'- gACCAGUCGCAGCCCGCGGACUACGACg -3'
miRNA:   3'- -UGGUCAGCGUCGGGCGCCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 15436 0.85 0.028738
Target:  5'- ---cGUCGUAGUCCGCGGGCUGCGACu -3'
miRNA:   3'- ugguCAGCGUCGGGCGCCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 58871 0.76 0.119645
Target:  5'- cGCCGG-CGCAGCCCGCGcguuGGCUGCuGCc -3'
miRNA:   3'- -UGGUCaGCGUCGGGCGC----CUGAUGcUG- -5'
23992 3' -59.3 NC_005262.1 + 41351 0.74 0.164974
Target:  5'- cCCGGaUgGCAGCUCGCGGACggcacgaACGGCa -3'
miRNA:   3'- uGGUC-AgCGUCGGGCGCCUGa------UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 49477 0.73 0.198078
Target:  5'- gACCAGUUGCGacGCCCGCGGug-AUGAa -3'
miRNA:   3'- -UGGUCAGCGU--CGGGCGCCugaUGCUg -5'
23992 3' -59.3 NC_005262.1 + 49330 0.72 0.249011
Target:  5'- uCUGGUCGCGGaCCucgcgCGCGGACUGCG-Cg -3'
miRNA:   3'- uGGUCAGCGUC-GG-----GCGCCUGAUGCuG- -5'
23992 3' -59.3 NC_005262.1 + 5046 0.71 0.266274
Target:  5'- gGCCGG-CGCcugaucggcgggcaGGCCCGCGG-CgGCGGCg -3'
miRNA:   3'- -UGGUCaGCG--------------UCGGGCGCCuGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 30140 0.71 0.26825
Target:  5'- uGCUGGUCGCcgaagcGCCgGCGGAUgcCGACg -3'
miRNA:   3'- -UGGUCAGCGu-----CGGgCGCCUGauGCUG- -5'
23992 3' -59.3 NC_005262.1 + 40655 0.71 0.274925
Target:  5'- -aCGGUCGCGGCaCCGCcGGugUugccCGGCg -3'
miRNA:   3'- ugGUCAGCGUCG-GGCG-CCugAu---GCUG- -5'
23992 3' -59.3 NC_005262.1 + 45982 0.71 0.274925
Target:  5'- uCCGGUCGgAugccuucuGCCCGCGGAUcACGAg -3'
miRNA:   3'- uGGUCAGCgU--------CGGGCGCCUGaUGCUg -5'
23992 3' -59.3 NC_005262.1 + 55319 0.71 0.274925
Target:  5'- uCCGGauuguugagCGCGGCCUGCGcGACgaaGCGACg -3'
miRNA:   3'- uGGUCa--------GCGUCGGGCGC-CUGa--UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 26717 0.71 0.287972
Target:  5'- cGCCAGcuaCGCGggcgcuucgauuuGCCCGCGGGCUuGCgGACg -3'
miRNA:   3'- -UGGUCa--GCGU-------------CGGGCGCCUGA-UG-CUG- -5'
23992 3' -59.3 NC_005262.1 + 11123 0.7 0.317772
Target:  5'- gGCCuGUUGCuGCgCGCGGuCUugcGCGACa -3'
miRNA:   3'- -UGGuCAGCGuCGgGCGCCuGA---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 46544 0.69 0.339423
Target:  5'- gGCCGG-CGCGGCauucggguccggCGCGGGCggcGCGGCg -3'
miRNA:   3'- -UGGUCaGCGUCGg-----------GCGCCUGa--UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 27615 0.69 0.34101
Target:  5'- cGCCcucGUCGguGCgCGCGGGC-ACGAg -3'
miRNA:   3'- -UGGu--CAGCguCGgGCGCCUGaUGCUg -5'
23992 3' -59.3 NC_005262.1 + 42161 0.69 0.34101
Target:  5'- cCCGGUCGCGGCCgauCGUcuguacgugauGGGCgACGGCg -3'
miRNA:   3'- uGGUCAGCGUCGG---GCG-----------CCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 22289 0.69 0.357172
Target:  5'- -gCAGagaGUGGCCCGagcuggcaGGACUACGACg -3'
miRNA:   3'- ugGUCag-CGUCGGGCg-------CCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 24295 0.69 0.365452
Target:  5'- uGCCGG-CGCAGCgUCGCGG-CUGCcGCc -3'
miRNA:   3'- -UGGUCaGCGUCG-GGCGCCuGAUGcUG- -5'
23992 3' -59.3 NC_005262.1 + 23525 0.69 0.365452
Target:  5'- cGCCAGUCGUcggacGGCUCGauGAC-GCGGCu -3'
miRNA:   3'- -UGGUCAGCG-----UCGGGCgcCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 6964 0.69 0.365452
Target:  5'- aACgCGaUCGCGGCCgGCaucgccgaGGACUACGGCc -3'
miRNA:   3'- -UG-GUcAGCGUCGGgCG--------CCUGAUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.