miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23992 3' -59.3 NC_005262.1 + 46478 0.67 0.463871
Target:  5'- gGCCAcGaCGCAGCCCGuCGacaugagcacuccGACcGCGACg -3'
miRNA:   3'- -UGGU-CaGCGUCGGGC-GC-------------CUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 43047 0.67 0.455216
Target:  5'- aGCCAGUCGUugcgcgucaugAGCUgGuCGG-UUACGACg -3'
miRNA:   3'- -UGGUCAGCG-----------UCGGgC-GCCuGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 15293 0.67 0.445702
Target:  5'- uGCCAGUCGUcgauucGCCgCGCauGGGCggGCGGCc -3'
miRNA:   3'- -UGGUCAGCGu-----CGG-GCG--CCUGa-UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10566 0.68 0.436301
Target:  5'- cGCgCAGcCGCAGCguaCCGCGGAgcagcGCGGCg -3'
miRNA:   3'- -UG-GUCaGCGUCG---GGCGCCUga---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 44982 0.68 0.427015
Target:  5'- gGCCGacGUgcaGCAGUCCGCGcGGCagGCGGCg -3'
miRNA:   3'- -UGGU--CAg--CGUCGGGCGC-CUGa-UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5272 0.68 0.417847
Target:  5'- cGCCGGcCGC-GCCCGCGccc-GCGACg -3'
miRNA:   3'- -UGGUCaGCGuCGGGCGCcugaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 45225 0.68 0.417847
Target:  5'- cGCCuuGUCGCgcacguucuGGCgCGCGGugUucGCGGCa -3'
miRNA:   3'- -UGGu-CAGCG---------UCGgGCGCCugA--UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 12900 0.68 0.399876
Target:  5'- cAUCAGcCcCGGCCUGCuGGACgACGACa -3'
miRNA:   3'- -UGGUCaGcGUCGGGCG-CCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10993 0.68 0.399876
Target:  5'- cGCCGGUCGC-GCUCGCacGGCUgACGAg -3'
miRNA:   3'- -UGGUCAGCGuCGGGCGc-CUGA-UGCUg -5'
23992 3' -59.3 NC_005262.1 + 48466 0.68 0.391077
Target:  5'- cGCgCGGaUCGCgAGCCgCGUGGGCacggGCGGCg -3'
miRNA:   3'- -UG-GUC-AGCG-UCGG-GCGCCUGa---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5161 0.68 0.390205
Target:  5'- aGCCGGUCGCAcGCgccgccgCCGCGGGcCUGCc-- -3'
miRNA:   3'- -UGGUCAGCGU-CG-------GGCGCCU-GAUGcug -5'
23992 3' -59.3 NC_005262.1 + 4674 0.69 0.382406
Target:  5'- aGCCAuGcCGCGGCCgGauCGGGCcGCGGCa -3'
miRNA:   3'- -UGGU-CaGCGUCGGgC--GCCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 50320 0.69 0.373864
Target:  5'- aGCCGGcCGCAgcGCCCGCcgcgcaGGACgaagcgcccGCGACg -3'
miRNA:   3'- -UGGUCaGCGU--CGGGCG------CCUGa--------UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10663 0.69 0.365452
Target:  5'- cGCCg--CGCuGCuCCGCGGuacGCUGCGGCu -3'
miRNA:   3'- -UGGucaGCGuCG-GGCGCC---UGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 23525 0.69 0.365452
Target:  5'- cGCCAGUCGUcggacGGCUCGauGAC-GCGGCu -3'
miRNA:   3'- -UGGUCAGCG-----UCGGGCgcCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 24295 0.69 0.365452
Target:  5'- uGCCGG-CGCAGCgUCGCGG-CUGCcGCc -3'
miRNA:   3'- -UGGUCaGCGUCG-GGCGCCuGAUGcUG- -5'
23992 3' -59.3 NC_005262.1 + 6964 0.69 0.365452
Target:  5'- aACgCGaUCGCGGCCgGCaucgccgaGGACUACGGCc -3'
miRNA:   3'- -UG-GUcAGCGUCGGgCG--------CCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 22289 0.69 0.357172
Target:  5'- -gCAGagaGUGGCCCGagcuggcaGGACUACGACg -3'
miRNA:   3'- ugGUCag-CGUCGGGCg-------CCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 27615 0.69 0.34101
Target:  5'- cGCCcucGUCGguGCgCGCGGGC-ACGAg -3'
miRNA:   3'- -UGGu--CAGCguCGgGCGCCUGaUGCUg -5'
23992 3' -59.3 NC_005262.1 + 42161 0.69 0.34101
Target:  5'- cCCGGUCGCGGCCgauCGUcuguacgugauGGGCgACGGCg -3'
miRNA:   3'- uGGUCAGCGUCGG---GCG-----------CCUGaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.