miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23992 3' -59.3 NC_005262.1 + 1486 0.66 0.524619
Target:  5'- uGCCGG-CGCuGCCgcugcaucUGCGGagggagGCUGCGGCg -3'
miRNA:   3'- -UGGUCaGCGuCGG--------GCGCC------UGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 2639 0.66 0.545208
Target:  5'- gACCAGaUCgGCccauGCCUGCGcGGCgccggGCGGCg -3'
miRNA:   3'- -UGGUC-AG-CGu---CGGGCGC-CUGa----UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 4674 0.69 0.382406
Target:  5'- aGCCAuGcCGCGGCCgGauCGGGCcGCGGCa -3'
miRNA:   3'- -UGGU-CaGCGUCGGgC--GCCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5046 0.71 0.266274
Target:  5'- gGCCGG-CGCcugaucggcgggcaGGCCCGCGG-CgGCGGCg -3'
miRNA:   3'- -UGGUCaGCG--------------UCGGGCGCCuGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5161 0.68 0.390205
Target:  5'- aGCCGGUCGCAcGCgccgccgCCGCGGGcCUGCc-- -3'
miRNA:   3'- -UGGUCAGCGU-CG-------GGCGCCU-GAUGcug -5'
23992 3' -59.3 NC_005262.1 + 5178 0.66 0.534879
Target:  5'- gGCCGgcGUCGCGGgC-GCGGGC-GCGGCc -3'
miRNA:   3'- -UGGU--CAGCGUCgGgCGCCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5272 0.68 0.417847
Target:  5'- cGCCGGcCGC-GCCCGCGccc-GCGACg -3'
miRNA:   3'- -UGGUCaGCGuCGGGCGCcugaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 6759 0.67 0.464838
Target:  5'- uCCAGUucCGCcGCUCGUGGAUcgaggACGGCg -3'
miRNA:   3'- uGGUCA--GCGuCGGGCGCCUGa----UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 6964 0.69 0.365452
Target:  5'- aACgCGaUCGCGGCCgGCaucgccgaGGACUACGGCc -3'
miRNA:   3'- -UG-GUcAGCGUCGGgCG--------CCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10566 0.68 0.436301
Target:  5'- cGCgCAGcCGCAGCguaCCGCGGAgcagcGCGGCg -3'
miRNA:   3'- -UG-GUCaGCGUCG---GGCGCCUga---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10663 0.69 0.365452
Target:  5'- cGCCg--CGCuGCuCCGCGGuacGCUGCGGCu -3'
miRNA:   3'- -UGGucaGCGuCG-GGCGCC---UGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10993 0.68 0.399876
Target:  5'- cGCCGGUCGC-GCUCGCacGGCUgACGAg -3'
miRNA:   3'- -UGGUCAGCGuCGGGCGc-CUGA-UGCUg -5'
23992 3' -59.3 NC_005262.1 + 11123 0.7 0.317772
Target:  5'- gGCCuGUUGCuGCgCGCGGuCUugcGCGACa -3'
miRNA:   3'- -UGGuCAGCGuCGgGCGCCuGA---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 12900 0.68 0.399876
Target:  5'- cAUCAGcCcCGGCCUGCuGGACgACGACa -3'
miRNA:   3'- -UGGUCaGcGUCGGGCG-CCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 13746 0.66 0.555601
Target:  5'- uGCCAGgcauuCAGCCuCGCGGGuCUGCGu- -3'
miRNA:   3'- -UGGUCagc--GUCGG-GCGCCU-GAUGCug -5'
23992 3' -59.3 NC_005262.1 + 15293 0.67 0.445702
Target:  5'- uGCCAGUCGUcgauucGCCgCGCauGGGCggGCGGCc -3'
miRNA:   3'- -UGGUCAGCGu-----CGG-GCG--CCUGa-UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 15346 1.09 0.000453
Target:  5'- gACCAGUCGCAGCCCGCGGACUACGACg -3'
miRNA:   3'- -UGGUCAGCGUCGGGCGCCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 15436 0.85 0.028738
Target:  5'- ---cGUCGUAGUCCGCGGGCUGCGACu -3'
miRNA:   3'- ugguCAGCGUCGGGCGCCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 17181 0.66 0.534879
Target:  5'- gACCuccUCGCGGCCCGCcgcgucgacGGGCgcgccuauCGGCg -3'
miRNA:   3'- -UGGuc-AGCGUCGGGCG---------CCUGau------GCUG- -5'
23992 3' -59.3 NC_005262.1 + 22289 0.69 0.357172
Target:  5'- -gCAGagaGUGGCCCGagcuggcaGGACUACGACg -3'
miRNA:   3'- ugGUCag-CGUCGGGCg-------CCUGAUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.