miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23992 3' -59.3 NC_005262.1 + 38427 0.66 0.523597
Target:  5'- gGCCGG-CGCGGUCgagaucaCGcCGGACgACGGCa -3'
miRNA:   3'- -UGGUCaGCGUCGG-------GC-GCCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 44982 0.68 0.427015
Target:  5'- gGCCGacGUgcaGCAGUCCGCGcGGCagGCGGCg -3'
miRNA:   3'- -UGGU--CAg--CGUCGGGCGC-CUGa-UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10566 0.68 0.436301
Target:  5'- cGCgCAGcCGCAGCguaCCGCGGAgcagcGCGGCg -3'
miRNA:   3'- -UG-GUCaGCGUCG---GGCGCCUga---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 15293 0.67 0.445702
Target:  5'- uGCCAGUCGUcgauucGCCgCGCauGGGCggGCGGCc -3'
miRNA:   3'- -UGGUCAGCGu-----CGG-GCG--CCUGa-UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 46478 0.67 0.463871
Target:  5'- gGCCAcGaCGCAGCCCGuCGacaugagcacuccGACcGCGACg -3'
miRNA:   3'- -UGGU-CaGCGUCGGGC-GC-------------CUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 37140 0.67 0.484393
Target:  5'- cGCCuGUUGUGGCCgGaUGGGCUcccuACGACc -3'
miRNA:   3'- -UGGuCAGCGUCGGgC-GCCUGA----UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 44335 0.67 0.494316
Target:  5'- cACCGGUCuGguGCCCGCaaaGAacguCGACg -3'
miRNA:   3'- -UGGUCAG-CguCGGGCGc--CUgau-GCUG- -5'
23992 3' -59.3 NC_005262.1 + 38539 0.66 0.511396
Target:  5'- uACaCGGUCGCGGUgacgaucggcaccgCCGCGGGCcggAUGAa -3'
miRNA:   3'- -UG-GUCAGCGUCG--------------GGCGCCUGa--UGCUg -5'
23992 3' -59.3 NC_005262.1 + 58185 0.66 0.514435
Target:  5'- cGCCuuuAGUguuucCGCGucGCCUGCGGAgaGCGGCg -3'
miRNA:   3'- -UGG---UCA-----GCGU--CGGGCGCCUgaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 10993 0.68 0.399876
Target:  5'- cGCCGGUCGC-GCUCGCacGGCUgACGAg -3'
miRNA:   3'- -UGGUCAGCGuCGGGCGc-CUGA-UGCUg -5'
23992 3' -59.3 NC_005262.1 + 12900 0.68 0.399876
Target:  5'- cAUCAGcCcCGGCCUGCuGGACgACGACa -3'
miRNA:   3'- -UGGUCaGcGUCGGGCG-CCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 48466 0.68 0.391077
Target:  5'- cGCgCGGaUCGCgAGCCgCGUGGGCacggGCGGCg -3'
miRNA:   3'- -UG-GUC-AGCG-UCGG-GCGCCUGa---UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 58871 0.76 0.119645
Target:  5'- cGCCGG-CGCAGCCCGCGcguuGGCUGCuGCc -3'
miRNA:   3'- -UGGUCaGCGUCGGGCGC----CUGAUGcUG- -5'
23992 3' -59.3 NC_005262.1 + 41351 0.74 0.164974
Target:  5'- cCCGGaUgGCAGCUCGCGGACggcacgaACGGCa -3'
miRNA:   3'- uGGUC-AgCGUCGGGCGCCUGa------UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 5046 0.71 0.266274
Target:  5'- gGCCGG-CGCcugaucggcgggcaGGCCCGCGG-CgGCGGCg -3'
miRNA:   3'- -UGGUCaGCG--------------UCGGGCGCCuGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 30140 0.71 0.26825
Target:  5'- uGCUGGUCGCcgaagcGCCgGCGGAUgcCGACg -3'
miRNA:   3'- -UGGUCAGCGu-----CGGgCGCCUGauGCUG- -5'
23992 3' -59.3 NC_005262.1 + 42161 0.69 0.34101
Target:  5'- cCCGGUCGCGGCCgauCGUcuguacgugauGGGCgACGGCg -3'
miRNA:   3'- uGGUCAGCGUCGG---GCG-----------CCUGaUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 22289 0.69 0.357172
Target:  5'- -gCAGagaGUGGCCCGagcuggcaGGACUACGACg -3'
miRNA:   3'- ugGUCag-CGUCGGGCg-------CCUGAUGCUG- -5'
23992 3' -59.3 NC_005262.1 + 50320 0.69 0.373864
Target:  5'- aGCCGGcCGCAgcGCCCGCcgcgcaGGACgaagcgcccGCGACg -3'
miRNA:   3'- -UGGUCaGCGU--CGGGCG------CCUGa--------UGCUG- -5'
23992 3' -59.3 NC_005262.1 + 4674 0.69 0.382406
Target:  5'- aGCCAuGcCGCGGCCgGauCGGGCcGCGGCa -3'
miRNA:   3'- -UGGU-CaGCGUCGGgC--GCCUGaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.