miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23994 3' -55.3 NC_005262.1 + 57689 0.66 0.738385
Target:  5'- --cGCGauacCACUCaAUGGCCGUGcGCCa -3'
miRNA:   3'- cuaCGCc---GUGAGcUGCCGGUACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 24 0.67 0.717426
Target:  5'- --gGCGGCG-UCGAUGGCaugcuccaGUGCCu -3'
miRNA:   3'- cuaCGCCGUgAGCUGCCGgua-----CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 49422 0.67 0.717426
Target:  5'- --cGCGGCgcgcgccuGCUCGuCGGUCAUGcccugcGCCu -3'
miRNA:   3'- cuaCGCCG--------UGAGCuGCCGGUACa-----UGG- -5'
23994 3' -55.3 NC_005262.1 + 35285 0.67 0.717426
Target:  5'- -uUGCGGacguaggcuggcCACgCGGCGGUCGUG-ACCu -3'
miRNA:   3'- cuACGCC------------GUGaGCUGCCGGUACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 31905 0.67 0.717426
Target:  5'- --cGCGGgcaaccCGCUCGACGcGCCGgacGUcGCCa -3'
miRNA:   3'- cuaCGCC------GUGAGCUGC-CGGUa--CA-UGG- -5'
23994 3' -55.3 NC_005262.1 + 62825 0.67 0.706817
Target:  5'- -cUGCGGCGCU-GACcGCCAgcgcGCCg -3'
miRNA:   3'- cuACGCCGUGAgCUGcCGGUaca-UGG- -5'
23994 3' -55.3 NC_005262.1 + 51425 0.67 0.706817
Target:  5'- --gGCGGCGCgcgCGAgGGCgA--UACCg -3'
miRNA:   3'- cuaCGCCGUGa--GCUgCCGgUacAUGG- -5'
23994 3' -55.3 NC_005262.1 + 24994 0.67 0.696136
Target:  5'- --gGCGGCAUUCGagcGCGGUC-UGgaaACCu -3'
miRNA:   3'- cuaCGCCGUGAGC---UGCCGGuACa--UGG- -5'
23994 3' -55.3 NC_005262.1 + 32954 0.67 0.696136
Target:  5'- --cGCGGCgaacGCUCGGCGccGCaCGUGcggGCCg -3'
miRNA:   3'- cuaCGCCG----UGAGCUGC--CG-GUACa--UGG- -5'
23994 3' -55.3 NC_005262.1 + 35643 0.67 0.685395
Target:  5'- --cGCGGCGggCGAUGgGCUAcucgGUGCCg -3'
miRNA:   3'- cuaCGCCGUgaGCUGC-CGGUa---CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 9457 0.67 0.685395
Target:  5'- uGUGCGGCACcaUCcugcACGGUaugGUGCCg -3'
miRNA:   3'- cUACGCCGUG--AGc---UGCCGguaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 52794 0.67 0.685395
Target:  5'- --cGCGGC-CUCGuccggcguCGGCCGgcgGCCu -3'
miRNA:   3'- cuaCGCCGuGAGCu-------GCCGGUacaUGG- -5'
23994 3' -55.3 NC_005262.1 + 49222 0.67 0.685395
Target:  5'- --gGCGGC-CUCGGCGGCgCGcaGU-CCg -3'
miRNA:   3'- cuaCGCCGuGAGCUGCCG-GUa-CAuGG- -5'
23994 3' -55.3 NC_005262.1 + 45052 0.67 0.674604
Target:  5'- --cGuCGGCccucgcCUCGGCGGCCAUcUGCUc -3'
miRNA:   3'- cuaC-GCCGu-----GAGCUGCCGGUAcAUGG- -5'
23994 3' -55.3 NC_005262.1 + 22837 0.67 0.674604
Target:  5'- cGcgGCgaaGGCGCUCGuCGGCUAUcucGCCa -3'
miRNA:   3'- -CuaCG---CCGUGAGCuGCCGGUAca-UGG- -5'
23994 3' -55.3 NC_005262.1 + 28206 0.67 0.674604
Target:  5'- cGUGgGGCACcgacgacaUCGACGGCgAUG-ACg -3'
miRNA:   3'- cUACgCCGUG--------AGCUGCCGgUACaUGg -5'
23994 3' -55.3 NC_005262.1 + 17935 0.67 0.663774
Target:  5'- --cGUaGCugUCGACGGCCGcGUuuCCa -3'
miRNA:   3'- cuaCGcCGugAGCUGCCGGUaCAu-GG- -5'
23994 3' -55.3 NC_005262.1 + 63268 0.67 0.663774
Target:  5'- --cGUGGCagccgccgccuGCUUGACGGCCGgcUGCUg -3'
miRNA:   3'- cuaCGCCG-----------UGAGCUGCCGGUacAUGG- -5'
23994 3' -55.3 NC_005262.1 + 17968 0.67 0.663774
Target:  5'- --gGCGGUGCUCGAUGugcguuCCGUGgucgACCu -3'
miRNA:   3'- cuaCGCCGUGAGCUGCc-----GGUACa---UGG- -5'
23994 3' -55.3 NC_005262.1 + 41944 0.67 0.662689
Target:  5'- cGGUGCGGCACcacacgcaGGCGGUCAgagaggGUcgguaacGCCg -3'
miRNA:   3'- -CUACGCCGUGag------CUGCCGGUa-----CA-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.