miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23994 5' -61.7 NC_005262.1 + 31053 0.66 0.425814
Target:  5'- cUGGUGCUGA-CCGaCGCcgaCGCGCu -3'
miRNA:   3'- uACCGCGACUaGGCgGCGcacGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 15230 0.66 0.425814
Target:  5'- --cGCGCcGAcucgacgCCgGCCGCGaUGCGUGCa -3'
miRNA:   3'- uacCGCGaCUa------GG-CGGCGC-ACGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 47800 0.66 0.425814
Target:  5'- -aGGCgGC-GAgCCGCCGCccgGCGCGg -3'
miRNA:   3'- uaCCG-CGaCUaGGCGGCGca-CGCGCg -5'
23994 5' -61.7 NC_005262.1 + 50403 0.66 0.425814
Target:  5'- --cGCGCggcGAUCagCGCCGCGgaGCGCGa -3'
miRNA:   3'- uacCGCGa--CUAG--GCGGCGCa-CGCGCg -5'
23994 5' -61.7 NC_005262.1 + 45899 0.66 0.425814
Target:  5'- -gGGCaGaagGAUCCGaCCGgaUGCGCGCg -3'
miRNA:   3'- uaCCG-Cga-CUAGGC-GGCgcACGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 30389 0.66 0.425814
Target:  5'- -aGGCGCaccccGAguacagCacgaGCCGCGUGCGCu- -3'
miRNA:   3'- uaCCGCGa----CUa-----Gg---CGGCGCACGCGcg -5'
23994 5' -61.7 NC_005262.1 + 45326 0.66 0.416755
Target:  5'- -cGGCGCgaugcaaGGUCUGCaagGCG-GCGCGg -3'
miRNA:   3'- uaCCGCGa------CUAGGCGg--CGCaCGCGCg -5'
23994 5' -61.7 NC_005262.1 + 11247 0.66 0.416755
Target:  5'- -cGGCGUUGucgcagggCCGCC-CGUGCGaccggaGCc -3'
miRNA:   3'- uaCCGCGACua------GGCGGcGCACGCg-----CG- -5'
23994 5' -61.7 NC_005262.1 + 46770 0.66 0.416755
Target:  5'- -cGGCGCUGA-CUGCauCG-GCGgGCg -3'
miRNA:   3'- uaCCGCGACUaGGCGgcGCaCGCgCG- -5'
23994 5' -61.7 NC_005262.1 + 35238 0.66 0.416755
Target:  5'- -cGGCGC-GAUCgGCaGCGgcUGgGCGCc -3'
miRNA:   3'- uaCCGCGaCUAGgCGgCGC--ACgCGCG- -5'
23994 5' -61.7 NC_005262.1 + 14375 0.66 0.416755
Target:  5'- -cGGCGgUGAUaaGCCGCaUGUGCu- -3'
miRNA:   3'- uaCCGCgACUAggCGGCGcACGCGcg -5'
23994 5' -61.7 NC_005262.1 + 33258 0.66 0.415856
Target:  5'- -cGaGCGCUuccugucGAUCCGCgagGCGUaccgcaucGCGCGCa -3'
miRNA:   3'- uaC-CGCGA-------CUAGGCGg--CGCA--------CGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 10898 0.66 0.407816
Target:  5'- --uGCGCUGGUCgugauCGUCGCGgcagcuCGCGCa -3'
miRNA:   3'- uacCGCGACUAG-----GCGGCGCac----GCGCG- -5'
23994 5' -61.7 NC_005262.1 + 11760 0.66 0.407816
Target:  5'- uUGcGCGC-GAagcUCUGCCggccaGCGUGCaGCGCg -3'
miRNA:   3'- uAC-CGCGaCU---AGGCGG-----CGCACG-CGCG- -5'
23994 5' -61.7 NC_005262.1 + 14114 0.66 0.407816
Target:  5'- -gGGCGUccagGGUCCGCCaaGCGacUGCaCGCu -3'
miRNA:   3'- uaCCGCGa---CUAGGCGG--CGC--ACGcGCG- -5'
23994 5' -61.7 NC_005262.1 + 41266 0.66 0.407816
Target:  5'- -gGGCGCgcacgcGAU-CGCgGCGgugcccuccUGCGCGCg -3'
miRNA:   3'- uaCCGCGa-----CUAgGCGgCGC---------ACGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 59131 0.66 0.407816
Target:  5'- -aGGCGaaccggCCggGCCGCGUcgccGCGCGCa -3'
miRNA:   3'- uaCCGCgacua-GG--CGGCGCA----CGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 56596 0.66 0.407816
Target:  5'- -aGGUGCgcAUCCG-CGCGUGgGCGa -3'
miRNA:   3'- uaCCGCGacUAGGCgGCGCACgCGCg -5'
23994 5' -61.7 NC_005262.1 + 49477 0.66 0.407816
Target:  5'- ---aCGCUGAagcgcgcauucUCCGgCG-GUGCGCGCa -3'
miRNA:   3'- uaccGCGACU-----------AGGCgGCgCACGCGCG- -5'
23994 5' -61.7 NC_005262.1 + 24555 0.66 0.398997
Target:  5'- -cGGCgugauccuGCUGAUCgcguccguCGCCGUGUcgcgGUGCGCu -3'
miRNA:   3'- uaCCG--------CGACUAG--------GCGGCGCA----CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.