miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23995 3' -47.9 NC_005262.1 + 25967 0.67 0.985012
Target:  5'- uCGAUCGUGUgccgugcuUCGccucGAUCGUCucgaaauACUGCc -3'
miRNA:   3'- -GCUAGCACA--------AGCu---CUAGUAGu------UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 19069 0.67 0.98298
Target:  5'- cCGGUCGUugUCGAcaaguuccaccuGGUCAgaauggcCAACCGCg -3'
miRNA:   3'- -GCUAGCAcaAGCU------------CUAGUa------GUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 59857 0.67 0.98298
Target:  5'- gCGAUCGcg-UCGcGGAguUCGUgAGCCGCu -3'
miRNA:   3'- -GCUAGCacaAGC-UCU--AGUAgUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 55466 0.67 0.980747
Target:  5'- aGGUgcUGUcGUUCGAGGagcugggCGUCGACCGUc -3'
miRNA:   3'- gCUA--GCA-CAAGCUCUa------GUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 16312 0.68 0.975634
Target:  5'- cCGAUCGaccgCGuuauGGUCAUC-GCCGCg -3'
miRNA:   3'- -GCUAGCacaaGCu---CUAGUAGuUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 43575 0.68 0.975634
Target:  5'- aGA-CGUGggaggUCGAGGUCAgcgCGAaCGCa -3'
miRNA:   3'- gCUaGCACa----AGCUCUAGUa--GUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 8660 0.68 0.96992
Target:  5'- uGGUCGUcucguuccggaaggGUUCGAGAUCAaUCAugaaaaugggaucaaGCCGg -3'
miRNA:   3'- gCUAGCA--------------CAAGCUCUAGU-AGU---------------UGGCg -5'
23995 3' -47.9 NC_005262.1 + 57741 0.68 0.969594
Target:  5'- uCGAUCGUGccgccgaUCGAG-UCGuucUCGACgCGCa -3'
miRNA:   3'- -GCUAGCACa------AGCUCuAGU---AGUUG-GCG- -5'
23995 3' -47.9 NC_005262.1 + 28792 0.68 0.969594
Target:  5'- gCGG-CGgaacucgUCGAuAUCGUCGACCGCg -3'
miRNA:   3'- -GCUaGCaca----AGCUcUAGUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 20609 0.68 0.969594
Target:  5'- uCGA--GUGgggUGAGGUCGUCGcgagcGCCGCg -3'
miRNA:   3'- -GCUagCACaa-GCUCUAGUAGU-----UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 55814 0.68 0.969594
Target:  5'- cCGG-CGgcuaCGAGGUCGUgAGCCGCu -3'
miRNA:   3'- -GCUaGCacaaGCUCUAGUAgUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 60513 0.68 0.969594
Target:  5'- uCGGUCGcuugGUUCGcGAUC-UCGACCa- -3'
miRNA:   3'- -GCUAGCa---CAAGCuCUAGuAGUUGGcg -5'
23995 3' -47.9 NC_005262.1 + 16587 0.68 0.969594
Target:  5'- gGcgCGUGUgcuggUCGAGG-CGgcgaagCAGCCGCg -3'
miRNA:   3'- gCuaGCACA-----AGCUCUaGUa-----GUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 50776 0.68 0.966204
Target:  5'- aGGUgCG-GUUCGAGAUCA--AGCCGa -3'
miRNA:   3'- gCUA-GCaCAAGCUCUAGUagUUGGCg -5'
23995 3' -47.9 NC_005262.1 + 59418 0.68 0.966204
Target:  5'- uGAUCGcGUUCG----CAUCAGCCGUc -3'
miRNA:   3'- gCUAGCaCAAGCucuaGUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 38531 0.68 0.966204
Target:  5'- aCGAgCGUGccgUCGuccggcguGAUC-UCGACCGCg -3'
miRNA:   3'- -GCUaGCACa--AGCu-------CUAGuAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 57675 0.69 0.962555
Target:  5'- aUGGcCGUGcgccaGAGGUCAUCcggAGCCGCg -3'
miRNA:   3'- -GCUaGCACaag--CUCUAGUAG---UUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 14709 0.69 0.962555
Target:  5'- aGAagGUGaugcucgUCGAGAUCGaCAGCCuGCa -3'
miRNA:   3'- gCUagCACa------AGCUCUAGUaGUUGG-CG- -5'
23995 3' -47.9 NC_005262.1 + 37299 0.69 0.949992
Target:  5'- gCGAUCc-GUUCaAGAUCGgcauuucuaUCGACCGCa -3'
miRNA:   3'- -GCUAGcaCAAGcUCUAGU---------AGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 14144 0.69 0.945246
Target:  5'- gGAUggCGUGcgcCGGGAUUGUCcGCCGCg -3'
miRNA:   3'- gCUA--GCACaa-GCUCUAGUAGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.