miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23995 5' -56.1 NC_005262.1 + 49894 0.66 0.685914
Target:  5'- -cGCGGCCGAuCGggCCg---GACGGu -3'
miRNA:   3'- aaCGCCGGCU-GCuaGGacuaCUGCUu -5'
23995 5' -56.1 NC_005262.1 + 46516 0.66 0.674993
Target:  5'- -gGCGGCgCGGCGGgccCCUGcgGACc-- -3'
miRNA:   3'- aaCGCCG-GCUGCUa--GGACuaCUGcuu -5'
23995 5' -56.1 NC_005262.1 + 4877 0.66 0.642029
Target:  5'- -cGCGGCCGGCuccGAUCCcGAcauGCGAGa -3'
miRNA:   3'- aaCGCCGGCUG---CUAGGaCUac-UGCUU- -5'
23995 5' -56.1 NC_005262.1 + 1501 0.66 0.642029
Target:  5'- -aGCGGCCG-CGGUC---GUGGCGGAu -3'
miRNA:   3'- aaCGCCGGCuGCUAGgacUACUGCUU- -5'
23995 5' -56.1 NC_005262.1 + 30048 0.66 0.642029
Target:  5'- -aGCGGgcaagaCCGACGAUgCUGccGGCGAc -3'
miRNA:   3'- aaCGCC------GGCUGCUAgGACuaCUGCUu -5'
23995 5' -56.1 NC_005262.1 + 42167 0.67 0.631009
Target:  5'- -cGCGGCCGAUcGUCUguacgUGAUGgGCGAc -3'
miRNA:   3'- aaCGCCGGCUGcUAGG-----ACUAC-UGCUu -5'
23995 5' -56.1 NC_005262.1 + 42754 0.67 0.597993
Target:  5'- --aCGGCaCGACGAUCgUGGUcgcGACGGAc -3'
miRNA:   3'- aacGCCG-GCUGCUAGgACUA---CUGCUU- -5'
23995 5' -56.1 NC_005262.1 + 6388 0.67 0.576112
Target:  5'- -gGCGGCCGGCGAgcgCaaGAaGGCGGc -3'
miRNA:   3'- aaCGCCGGCUGCUa--GgaCUaCUGCUu -5'
23995 5' -56.1 NC_005262.1 + 5199 0.67 0.575023
Target:  5'- -cGCGGCCGGCGcgaccgagggcguAUCCUGcacgaucgccGUGGCGu- -3'
miRNA:   3'- aaCGCCGGCUGC-------------UAGGAC----------UACUGCuu -5'
23995 5' -56.1 NC_005262.1 + 5042 0.68 0.565237
Target:  5'- -cGcCGGCCGGCG--CCUGAUcGGCGGg -3'
miRNA:   3'- aaC-GCCGGCUGCuaGGACUA-CUGCUu -5'
23995 5' -56.1 NC_005262.1 + 42506 0.69 0.500342
Target:  5'- gUUGCGGCCGGCuGGcgccgCCUGAaagccggagagggUGACGGu -3'
miRNA:   3'- -AACGCCGGCUG-CUa----GGACU-------------ACUGCUu -5'
23995 5' -56.1 NC_005262.1 + 61110 0.7 0.440896
Target:  5'- gUUGCGGUuagcagacgucuCGGCGAgcggCUUGAUGACGGu -3'
miRNA:   3'- -AACGCCG------------GCUGCUa---GGACUACUGCUu -5'
23995 5' -56.1 NC_005262.1 + 53334 0.7 0.431218
Target:  5'- -cGCGGUCGAUGGUCU---UGGCGAAg -3'
miRNA:   3'- aaCGCCGGCUGCUAGGacuACUGCUU- -5'
23995 5' -56.1 NC_005262.1 + 60477 0.7 0.421667
Target:  5'- aUGCcGCCGACGAUCUUGcgGccgGCGAc -3'
miRNA:   3'- aACGcCGGCUGCUAGGACuaC---UGCUu -5'
23995 5' -56.1 NC_005262.1 + 23397 0.7 0.412244
Target:  5'- -cGCGGCgccuUGAUGcgCUUGAUGGCGAAc -3'
miRNA:   3'- aaCGCCG----GCUGCuaGGACUACUGCUU- -5'
23995 5' -56.1 NC_005262.1 + 55355 0.73 0.287569
Target:  5'- aUGCGGCCGAacgcCGAgugCgUGAUGAUGAc -3'
miRNA:   3'- aACGCCGGCU----GCUa--GgACUACUGCUu -5'
23995 5' -56.1 NC_005262.1 + 16066 1.03 0.002143
Target:  5'- cUUGCGGCCGACGAUCCUGAUGACGAAc -3'
miRNA:   3'- -AACGCCGGCUGCUAGGACUACUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.