miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23996 3' -59.4 NC_005262.1 + 44106 0.66 0.56035
Target:  5'- uGAUCGCcuGG-GCGaaaGAGCGCaUCGg -3'
miRNA:   3'- uCUGGCGuuCCuCGCg--CUCGCGcAGC- -5'
23996 3' -59.4 NC_005262.1 + 41285 0.66 0.557235
Target:  5'- cGGCCGCGcguGGGcgacaucaagguauGGCGCG-GCGCGa-- -3'
miRNA:   3'- uCUGGCGU---UCC--------------UCGCGCuCGCGCagc -5'
23996 3' -59.4 NC_005262.1 + 7506 0.66 0.554126
Target:  5'- uGGAUCGCGacgcauccaucgggcAGGuucggcGGCGCGucGGCGCGcUCGa -3'
miRNA:   3'- -UCUGGCGU---------------UCC------UCGCGC--UCGCGC-AGC- -5'
23996 3' -59.4 NC_005262.1 + 56952 0.66 0.549987
Target:  5'- cGAuCCGCGcgGGcGAGUucGCGGGCGUgGUCGg -3'
miRNA:   3'- uCU-GGCGU--UC-CUCG--CGCUCGCG-CAGC- -5'
23996 3' -59.4 NC_005262.1 + 15922 0.66 0.547922
Target:  5'- -uGCCGCAucacguacugcuGGAuCGCGAGCGCGa-- -3'
miRNA:   3'- ucUGGCGUu-----------CCUcGCGCUCGCGCagc -5'
23996 3' -59.4 NC_005262.1 + 62690 0.66 0.539685
Target:  5'- cGGCgGCAgGGGAGCGCGAcgauggguaaucGCGCa--- -3'
miRNA:   3'- uCUGgCGU-UCCUCGCGCU------------CGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 10571 0.66 0.539685
Target:  5'- -aGCCGCAGcguaccgcGGAGCaGCGcGGCGCGagCGg -3'
miRNA:   3'- ucUGGCGUU--------CCUCG-CGC-UCGCGCa-GC- -5'
23996 3' -59.4 NC_005262.1 + 27074 0.66 0.539685
Target:  5'- cGGCgCGCucGGcGGGCGUGAGCGaugccauuucuuCGUCGg -3'
miRNA:   3'- uCUG-GCGu-UC-CUCGCGCUCGC------------GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 58064 0.66 0.539685
Target:  5'- --uCCGU-AGGAGaUGCGGGCGCGcCa -3'
miRNA:   3'- ucuGGCGuUCCUC-GCGCUCGCGCaGc -5'
23996 3' -59.4 NC_005262.1 + 50258 0.66 0.519284
Target:  5'- cGACCGCcgcaacGAGG-GCGCGccCGCGcCGg -3'
miRNA:   3'- uCUGGCG------UUCCuCGCGCucGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 20578 0.66 0.519284
Target:  5'- cAGcCCgGCGAGcAGCGCGcGGCGCGcCGc -3'
miRNA:   3'- -UCuGG-CGUUCcUCGCGC-UCGCGCaGC- -5'
23996 3' -59.4 NC_005262.1 + 53755 0.67 0.509198
Target:  5'- cGACC-CAcaagaAGGAGgGCGGGCuguaCGUCGg -3'
miRNA:   3'- uCUGGcGU-----UCCUCgCGCUCGc---GCAGC- -5'
23996 3' -59.4 NC_005262.1 + 27872 0.67 0.509198
Target:  5'- cGGCgGCAAGGcGGC-CGAGCGCa--- -3'
miRNA:   3'- uCUGgCGUUCC-UCGcGCUCGCGcagc -5'
23996 3' -59.4 NC_005262.1 + 59516 0.67 0.508194
Target:  5'- gAGGCCGUAGGccagcuucaggucGAGCGUu-GCGCGUgCGa -3'
miRNA:   3'- -UCUGGCGUUC-------------CUCGCGcuCGCGCA-GC- -5'
23996 3' -59.4 NC_005262.1 + 49523 0.67 0.499196
Target:  5'- aGGGCCuGCucGAGGAGCuGCcgcaGAGCGCGcUCc -3'
miRNA:   3'- -UCUGG-CG--UUCCUCG-CG----CUCGCGC-AGc -5'
23996 3' -59.4 NC_005262.1 + 49824 0.67 0.499196
Target:  5'- cGGCCGCGcgauGGAGCGCGcgaauggcccGGUGCcggCGg -3'
miRNA:   3'- uCUGGCGUu---CCUCGCGC----------UCGCGca-GC- -5'
23996 3' -59.4 NC_005262.1 + 23018 0.67 0.499196
Target:  5'- --cUCGCGcGGAGCauggcgucgGCGAGCGCGUa- -3'
miRNA:   3'- ucuGGCGUuCCUCG---------CGCUCGCGCAgc -5'
23996 3' -59.4 NC_005262.1 + 31348 0.67 0.496212
Target:  5'- cGACUGCGgcugccgaucgaugGGGAcCGacuuGGGCGCGUCGa -3'
miRNA:   3'- uCUGGCGU--------------UCCUcGCg---CUCGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 34025 0.67 0.489281
Target:  5'- cGGGCCGCAucGuGCGC---CGCGUCGa -3'
miRNA:   3'- -UCUGGCGUucCuCGCGcucGCGCAGC- -5'
23996 3' -59.4 NC_005262.1 + 47636 0.67 0.489281
Target:  5'- cGGCUGCcgGAGGAcaagaaGCGCGAG-GCGaUCGa -3'
miRNA:   3'- uCUGGCG--UUCCU------CGCGCUCgCGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.