Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23996 | 3' | -59.4 | NC_005262.1 | + | 60547 | 0.71 | 0.265248 |
Target: 5'- cGACCGCAAGGgcacgcugacgccGGCGCucGGCGCgGUCu -3' miRNA: 3'- uCUGGCGUUCC-------------UCGCGc-UCGCG-CAGc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 54420 | 0.72 | 0.259439 |
Target: 5'- uAGAUCG--AGGuGC-CGAGCGCGUCGa -3' miRNA: 3'- -UCUGGCguUCCuCGcGCUCGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 42338 | 0.72 | 0.259439 |
Target: 5'- -cGCCGCAGuGAGCGCG-GCGC-UCGg -3' miRNA: 3'- ucUGGCGUUcCUCGCGCuCGCGcAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 44766 | 0.72 | 0.240823 |
Target: 5'- cGuuCGgAucGGGCGCGGGCGCGUCGc -3' miRNA: 3'- uCugGCgUucCUCGCGCUCGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 22301 | 0.72 | 0.253106 |
Target: 5'- cGGCCGUGAGcuugucGAGCGCGAGCccgGCGUUc -3' miRNA: 3'- uCUGGCGUUC------CUCGCGCUCG---CGCAGc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 50591 | 0.72 | 0.246902 |
Target: 5'- -uGCCGCucaacccGGuAGCGCGAGCGCuUCGg -3' miRNA: 3'- ucUGGCGuu-----CC-UCGCGCUCGCGcAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 17102 | 0.72 | 0.249368 |
Target: 5'- cGGGCCGCGAGGAgguccaccGCGCggcgauggaccacaaGAacgcGCGCGUCGc -3' miRNA: 3'- -UCUGGCGUUCCU--------CGCG---------------CU----CGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 37714 | 0.72 | 0.259439 |
Target: 5'- cGGCgUGCAGauGGGGCGUGAagggcuGCGCGUCGa -3' miRNA: 3'- uCUG-GCGUU--CCUCGCGCU------CGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 6262 | 0.73 | 0.217751 |
Target: 5'- uGACCGCGAGGcGCaG-GAGCGCGUg- -3' miRNA: 3'- uCUGGCGUUCCuCG-CgCUCGCGCAgc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 15596 | 0.73 | 0.20694 |
Target: 5'- -cGCgCGCGAGGAGCGCGugcggcaggAGCGCaUCGa -3' miRNA: 3'- ucUG-GCGUUCCUCGCGC---------UCGCGcAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 19168 | 0.75 | 0.151418 |
Target: 5'- uGGCUGCAucaguucaAGGAGCGCG-GCGgCGUCa -3' miRNA: 3'- uCUGGCGU--------UCCUCGCGCuCGC-GCAGc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 59260 | 0.76 | 0.129048 |
Target: 5'- -aGCaCGCGcAGGAGCGaaaCGAGCGCGUCGc -3' miRNA: 3'- ucUG-GCGU-UCCUCGC---GCUCGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 13457 | 0.77 | 0.106537 |
Target: 5'- aGGGUCGCAAGG-GCGCGAagcccgcGCGCGUCGc -3' miRNA: 3'- -UCUGGCGUUCCuCGCGCU-------CGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 31170 | 0.77 | 0.106827 |
Target: 5'- cGGGCCGCGgcucgcccuucAGGucgGCGAGCGCGUCGg -3' miRNA: 3'- -UCUGGCGU-----------UCCucgCGCUCGCGCAGC- -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 29871 | 0.8 | 0.07275 |
Target: 5'- uGACCGaCGAGGAGCGCGcGGCGCuUCa -3' miRNA: 3'- uCUGGC-GUUCCUCGCGC-UCGCGcAGc -5' |
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23996 | 3' | -59.4 | NC_005262.1 | + | 17321 | 1.07 | 0.000656 |
Target: 5'- cAGACCGCAAGGAGCGCGAGCGCGUCGc -3' miRNA: 3'- -UCUGGCGUUCCUCGCGCUCGCGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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